{
"@context": "/terms/",
"@id": "/tissues/IGVFSM5118GDEW/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5118GDEW",
"age": "unknown",
"aliases": [
"buenrostro-bernstein:BioSam 5150_SS-PKR 500"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Tissue [IGVFSM5118GDEW](/tissues/IGVFSM5118GDEW/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/tissues/IGVFSM5118GDEW/"
},
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000646](/sample-terms/NTR_0000646/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000646/"
}
],
"WARNING": [
{
"category": "missing age",
"detail": "Tissue [IGVFSM5118GDEW](/tissues/IGVFSM5118GDEW/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
"level_name": "WARNING",
"name": "audit_biosample_age",
"path": "/tissues/IGVFSM5118GDEW/"
}
]
},
"award": {
"@id": "/awards/HG011986/",
"component": "mapping"
},
"cellular_sub_pool": "SS-PKR 500",
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-05T15:24:24.644234+00:00",
"description": "CASTJ mouse brain left cortex tissue",
"donors": [
{
"@id": "/rodent-donors/IGVFDO9355TCPX/",
"accession": "IGVFDO9355TCPX",
"status": "released",
"strain": "CASTJ"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS8255ZBNK/",
"accession": "IGVFDS8255ZBNK",
"aliases": [
"buenrostro-bernstein:scATAC Lib 1477"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell ATAC-seq (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS3683ZDLI/",
"accession": "IGVFDS3683ZDLI",
"aliases": [
"buenrostro-bernstein:scRNA Lib 795"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell RNA sequencing assay (SHARE-seq)"
},
{
"@id": "/analysis-sets/IGVFDS5790TJZR/",
"accession": "IGVFDS5790TJZR",
"aliases": [
"buenrostro-bernstein:AnalysisSet_BioSam-5150_SS-PKR 500"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"status": "in progress",
"summary": "SHARE-seq: alignments, fragments, index, sparse gene count matrix"
}
],
"institutional_certificates": [],
"lab": {
"@id": "/labs/jason-buenrostro/",
"title": "Jason Buenrostro, Broad"
},
"multiplexed_in": [],
"origin_of": [],
"part_of": "/tissues/IGVFSM2795JCVY/",
"parts": [],
"pooled_in": [],
"release_timestamp": "2025-03-28T21:22:08.270896+00:00",
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"status": "released",
"term_name": "left cerebral cortex"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/jackson-labs/",
"status": "released",
"title": "The Jackson Laboratory"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"summary": "Mus musculus CASTJ (male) left cerebral cortex tissue (cellular sub pool: SS-PKR 500)",
"taxa": "Mus musculus",
"uuid": "b57358ec-76e4-48e9-b84a-ccb9e89decc3",
"virtual": false
}