{
"@context": "/terms/",
"@id": "/tissues/IGVFSM5054EMST/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5054EMST",
"age": "79",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN1632_CBL_B2"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM5054EMST](/tissues/IGVFSM5054EMST/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM5054EMST/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T12:59:52.366277+00:00",
"date_obtained": "2023-08-21",
"donors": [
{
"@id": "/human-donors/IGVFDO5205IAEO/",
"accession": "IGVFDO5205IAEO",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS8349LZJV/",
"accession": "IGVFDS8349LZJV",
"aliases": [
"igvf:corces_measurementSet_X054_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6933DFAJ/",
"accession": "IGVFDS6933DFAJ",
"aliases": [
"igvf:corces_measurementSet_X054_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8549HZIC/",
"accession": "IGVFDS8549HZIC",
"aliases": [
"igvf:corces_measurementSet_X054_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2649MJUU/",
"accession": "IGVFDS2649MJUU",
"aliases": [
"igvf:corces_measurementSet_X054_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7756RFRK/",
"accession": "IGVFDS7756RFRK",
"aliases": [
"igvf:corces_measurementSet_X054_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7137NKCZ/",
"accession": "IGVFDS7137NKCZ",
"aliases": [
"igvf:corces_measurementSet_X054_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3310NAMG/",
"accession": "IGVFDS3310NAMG",
"aliases": [
"igvf:corces_measurementSet_X054_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9179BFME/",
"accession": "IGVFDS9179BFME",
"aliases": [
"igvf:corces_measurementSet_X054_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9185CYAF/",
"accession": "IGVFDS9185CYAF",
"aliases": [
"igvf:corces_measurementSet_X054_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5995PZJX/",
"accession": "IGVFDS5995PZJX",
"aliases": [
"igvf:corces_measurementSet_X054_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5157MMQX/",
"accession": "IGVFDS5157MMQX",
"aliases": [
"igvf:corces_measurementSet_X054_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4233IEWY/",
"accession": "IGVFDS4233IEWY",
"aliases": [
"igvf:corces_measurementSet_X054_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6970AOCL/",
"accession": "IGVFDS6970AOCL",
"aliases": [
"igvf:corces_measurementSet_X054_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1514EPFX/",
"accession": "IGVFDS1514EPFX",
"aliases": [
"igvf:corces_measurementSet_X054_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1103ZNFY/",
"accession": "IGVFDS1103ZNFY",
"aliases": [
"igvf:corces_measurementSet_X054_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5862BUCU/",
"accession": "IGVFDS5862BUCU",
"aliases": [
"igvf:corces_measurementSet_X054_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 79,
"lower_bound_age_in_hours": 692040,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM0883YRFL/",
"accession": "IGVFSM0883YRFL",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM5537DDNC/",
"accession": "IGVFSM5537DDNC",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9204TXPW/",
"accession": "IGVFSM9204TXPW",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9796VADK/",
"accession": "IGVFSM9796VADK",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4944KVPX/",
"accession": "IGVFSM4944KVPX",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2747EUIZ/",
"accession": "IGVFSM2747EUIZ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1438DTKA/",
"accession": "IGVFSM1438DTKA",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4359VXQA/",
"accession": "IGVFSM4359VXQA",
"status": "preview"
}
],
"origin_of": [],
"part_of": "/tissues/IGVFSM9680YRHS/",
"parts": [],
"pmi": 258,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002129/",
"status": "preview",
"term_name": "cerebellar cortex"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 79 years) cerebellar cortex tissue",
"taxa": "Homo sapiens",
"upper_bound_age": 79,
"upper_bound_age_in_hours": 692040,
"uuid": "a2a1bee7-28a2-4dde-952d-14b093640ae3",
"virtual": false
}