posterior cingulate gyrus — IGVFSM4995KUZR

preview
1{
2    "@context": "/terms/",
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4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
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11    "age": "83",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1809_CING"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM4995KUZR](/tissues/IGVFSM4995KUZR/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM4995KUZR/"
25            },
26            {
27                "category": "mismatched status",
28                "detail": "Preview tissue [IGVFSM4995KUZR](/tissues/IGVFSM4995KUZR/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_item_status",
32                "path": "/tissues/IGVFSM4995KUZR/"
33            },
34            {
35                "category": "missing CCF ID",
36                "detail": "Tissue [IGVFSM4995KUZR](/tissues/IGVFSM4995KUZR/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
37                "level": 30,
38                "level_name": "INTERNAL_ACTION",
39                "name": "audit_tissue_ccf_id",
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41            }
42        ]
43    },
44    "award": {
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46        "component": "mapping"
47    },
48    "classifications": [
49        "tissue"
50    ],
51    "creation_timestamp": "2025-03-19T04:08:52.925646+00:00",
52    "date_obtained": "2022-11-01",
53    "disease_terms": [
54        {
55            "@id": "/phenotype-terms/DOID_14330/",
56            "status": "in progress",
57            "term_name": "Parkinson's disease"
58        },
59        {
60            "@id": "/phenotype-terms/DOID_9246/",
61            "status": "in progress",
62            "term_name": "cerebral amyloid angiopathy"
63        }
64    ],
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196                "title": "Ryan Corces, Gladstone Institute UCSF"
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224                "title": "Ryan Corces, Gladstone Institute UCSF"
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238                "title": "Ryan Corces, Gladstone Institute UCSF"
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252                "title": "Ryan Corces, Gladstone Institute UCSF"
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266                "title": "Ryan Corces, Gladstone Institute UCSF"
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294                "title": "Ryan Corces, Gladstone Institute UCSF"
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308                "title": "Ryan Corces, Gladstone Institute UCSF"
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322                "title": "Ryan Corces, Gladstone Institute UCSF"
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336                "title": "Ryan Corces, Gladstone Institute UCSF"
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350                "title": "Ryan Corces, Gladstone Institute UCSF"
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364                "title": "Ryan Corces, Gladstone Institute UCSF"
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504                "title": "Ryan Corces, Gladstone Institute UCSF"
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546                "title": "Ryan Corces, Gladstone Institute UCSF"
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560                "title": "Ryan Corces, Gladstone Institute UCSF"
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563            "status": "preview",
564            "summary": "single-nucleus ATAC-seq (10x multiome)"
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574                "title": "Ryan Corces, Gladstone Institute UCSF"
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578            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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588                "title": "Ryan Corces, Gladstone Institute UCSF"
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591            "status": "preview",
592            "summary": "single-nucleus ATAC-seq (10x multiome)"
593        },
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602                "title": "Ryan Corces, Gladstone Institute UCSF"
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605            "status": "preview",
606            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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619            "status": "preview",
620            "summary": "single-nucleus ATAC-seq (10x multiome)"
621        },
622        {
623            "@id": "/measurement-sets/IGVFDS9885KGYZ/",
624            "accession": "IGVFDS9885KGYZ",
625            "aliases": [
626                "igvf:corces_measurementSet_RP033_G1_RNA"
627            ],
628            "file_set_type": "experimental data",
629            "lab": {
630                "title": "Ryan Corces, Gladstone Institute UCSF"
631            },
632            "preferred_assay_title": "10x multiome",
633            "status": "preview",
634            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
635        },
636        {
637            "@id": "/measurement-sets/IGVFDS8614EBXF/",
638            "accession": "IGVFDS8614EBXF",
639            "aliases": [
640                "igvf:corces_measurementSet_RP033_G8_RNA"
641            ],
642            "file_set_type": "experimental data",
643            "lab": {
644                "title": "Ryan Corces, Gladstone Institute UCSF"
645            },
646            "preferred_assay_title": "10x multiome",
647            "status": "preview",
648            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
649        },
650        {
651            "@id": "/measurement-sets/IGVFDS5292TDBG/",
652            "accession": "IGVFDS5292TDBG",
653            "aliases": [
654                "igvf:corces_measurementSet_RP033_G8_ATAC"
655            ],
656            "file_set_type": "experimental data",
657            "lab": {
658                "title": "Ryan Corces, Gladstone Institute UCSF"
659            },
660            "preferred_assay_title": "10x multiome",
661            "status": "preview",
662            "summary": "single-nucleus ATAC-seq (10x multiome)"
663        },
664        {
665            "@id": "/measurement-sets/IGVFDS4194GPDU/",
666            "accession": "IGVFDS4194GPDU",
667            "aliases": [
668                "igvf:corces_measurementSet_RP033_G4_ATAC"
669            ],
670            "file_set_type": "experimental data",
671            "lab": {
672                "title": "Ryan Corces, Gladstone Institute UCSF"
673            },
674            "preferred_assay_title": "10x multiome",
675            "status": "preview",
676            "summary": "single-nucleus ATAC-seq (10x multiome)"
677        },
678        {
679            "@id": "/measurement-sets/IGVFDS6955FGRJ/",
680            "accession": "IGVFDS6955FGRJ",
681            "aliases": [
682                "igvf:corces_measurementSet_RP033_G4_RNA"
683            ],
684            "file_set_type": "experimental data",
685            "lab": {
686                "title": "Ryan Corces, Gladstone Institute UCSF"
687            },
688            "preferred_assay_title": "10x multiome",
689            "status": "preview",
690            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
691        },
692        {
693            "@id": "/measurement-sets/IGVFDS4356BCAL/",
694            "accession": "IGVFDS4356BCAL",
695            "aliases": [
696                "igvf:corces_measurementSet_RP033_G5_ATAC"
697            ],
698            "file_set_type": "experimental data",
699            "lab": {
700                "title": "Ryan Corces, Gladstone Institute UCSF"
701            },
702            "preferred_assay_title": "10x multiome",
703            "status": "preview",
704            "summary": "single-nucleus ATAC-seq (10x multiome)"
705        },
706        {
707            "@id": "/measurement-sets/IGVFDS5819VBCX/",
708            "accession": "IGVFDS5819VBCX",
709            "aliases": [
710                "igvf:corces_measurementSet_RP033_G5_RNA"
711            ],
712            "file_set_type": "experimental data",
713            "lab": {
714                "title": "Ryan Corces, Gladstone Institute UCSF"
715            },
716            "preferred_assay_title": "10x multiome",
717            "status": "preview",
718            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
719        },
720        {
721            "@id": "/measurement-sets/IGVFDS7886YBBF/",
722            "accession": "IGVFDS7886YBBF",
723            "aliases": [
724                "igvf:corces_measurementSet_RP033_G6_ATAC"
725            ],
726            "file_set_type": "experimental data",
727            "lab": {
728                "title": "Ryan Corces, Gladstone Institute UCSF"
729            },
730            "preferred_assay_title": "10x multiome",
731            "status": "preview",
732            "summary": "single-nucleus ATAC-seq (10x multiome)"
733        },
734        {
735            "@id": "/measurement-sets/IGVFDS9901CQZL/",
736            "accession": "IGVFDS9901CQZL",
737            "aliases": [
738                "igvf:corces_measurementSet_RP033_G6_RNA"
739            ],
740            "file_set_type": "experimental data",
741            "lab": {
742                "title": "Ryan Corces, Gladstone Institute UCSF"
743            },
744            "preferred_assay_title": "10x multiome",
745            "status": "preview",
746            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
747        }
748    ],
749    "institutional_certificates": [
750        {
751            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
752            "certificate_identifier": "IP115-05",
753            "controlled_access": false,
754            "status": "in progress"
755        }
756    ],
757    "lab": {
758        "@id": "/labs/ryan-corces/",
759        "title": "Ryan Corces, Gladstone Institute UCSF"
760    },
761    "lower_bound_age": 83,
762    "lower_bound_age_in_hours": 727080,
763    "multiplexed_in": [
764        {
765            "@id": "/multiplexed-samples/IGVFSM7828IXBW/",
766            "accession": "IGVFSM7828IXBW",
767            "status": "preview"
768        },
769        {
770            "@id": "/multiplexed-samples/IGVFSM0906OTCP/",
771            "accession": "IGVFSM0906OTCP",
772            "status": "preview"
773        },
774        {
775            "@id": "/multiplexed-samples/IGVFSM9165ZREW/",
776            "accession": "IGVFSM9165ZREW",
777            "status": "preview"
778        },
779        {
780            "@id": "/multiplexed-samples/IGVFSM7268MVFI/",
781            "accession": "IGVFSM7268MVFI",
782            "status": "preview"
783        },
784        {
785            "@id": "/multiplexed-samples/IGVFSM4418HKGN/",
786            "accession": "IGVFSM4418HKGN",
787            "status": "preview"
788        },
789        {
790            "@id": "/multiplexed-samples/IGVFSM3364ZVVD/",
791            "accession": "IGVFSM3364ZVVD",
792            "status": "preview"
793        },
794        {
795            "@id": "/multiplexed-samples/IGVFSM9021MNYU/",
796            "accession": "IGVFSM9021MNYU",
797            "status": "preview"
798        },
799        {
800            "@id": "/multiplexed-samples/IGVFSM4152BKDQ/",
801            "accession": "IGVFSM4152BKDQ",
802            "status": "preview"
803        },
804        {
805            "@id": "/multiplexed-samples/IGVFSM0752KTLR/",
806            "accession": "IGVFSM0752KTLR",
807            "status": "preview"
808        },
809        {
810            "@id": "/multiplexed-samples/IGVFSM3226MLFV/",
811            "accession": "IGVFSM3226MLFV",
812            "status": "preview"
813        },
814        {
815            "@id": "/multiplexed-samples/IGVFSM5046SGAL/",
816            "accession": "IGVFSM5046SGAL",
817            "status": "preview"
818        },
819        {
820            "@id": "/multiplexed-samples/IGVFSM9167CXIN/",
821            "accession": "IGVFSM9167CXIN",
822            "status": "preview"
823        },
824        {
825            "@id": "/multiplexed-samples/IGVFSM4328GBGB/",
826            "accession": "IGVFSM4328GBGB",
827            "status": "preview"
828        },
829        {
830            "@id": "/multiplexed-samples/IGVFSM1205XBBX/",
831            "accession": "IGVFSM1205XBBX",
832            "status": "preview"
833        },
834        {
835            "@id": "/multiplexed-samples/IGVFSM6267UURV/",
836            "accession": "IGVFSM6267UURV",
837            "status": "preview"
838        },
839        {
840            "@id": "/multiplexed-samples/IGVFSM3122KACM/",
841            "accession": "IGVFSM3122KACM",
842            "status": "preview"
843        },
844        {
845            "@id": "/multiplexed-samples/IGVFSM9610QWFB/",
846            "accession": "IGVFSM9610QWFB",
847            "status": "preview"
848        },
849        {
850            "@id": "/multiplexed-samples/IGVFSM8786SGJT/",
851            "accession": "IGVFSM8786SGJT",
852            "status": "preview"
853        },
854        {
855            "@id": "/multiplexed-samples/IGVFSM3528WKEF/",
856            "accession": "IGVFSM3528WKEF",
857            "status": "preview"
858        },
859        {
860            "@id": "/multiplexed-samples/IGVFSM6670KYMT/",
861            "accession": "IGVFSM6670KYMT",
862            "status": "preview"
863        },
864        {
865            "@id": "/multiplexed-samples/IGVFSM5427LJNG/",
866            "accession": "IGVFSM5427LJNG",
867            "status": "preview"
868        },
869        {
870            "@id": "/multiplexed-samples/IGVFSM3471ECAX/",
871            "accession": "IGVFSM3471ECAX",
872            "status": "preview"
873        },
874        {
875            "@id": "/multiplexed-samples/IGVFSM2223HMDU/",
876            "accession": "IGVFSM2223HMDU",
877            "status": "preview"
878        },
879        {
880            "@id": "/multiplexed-samples/IGVFSM9620UKJQ/",
881            "accession": "IGVFSM9620UKJQ",
882            "status": "preview"
883        }
884    ],
885    "origin_of": [],
886    "parts": [],
887    "pmi": 160,
888    "pmi_units": "minute",
889    "pooled_in": [],
890    "preservation_method": "flash-freezing",
891    "protocols": [
892        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
893    ],
894    "sample_terms": [
895        {
896            "@id": "/sample-terms/UBERON_0002740/",
897            "status": "preview",
898            "term_name": "posterior cingulate gyrus"
899        }
900    ],
901    "schema_version": "21",
902    "sex": "male",
903    "sorted_fractions": [],
904    "sources": [
905        {
906            "@id": "/sources/banner-health/",
907            "status": "released",
908            "title": "Banner Health"
909        }
910    ],
911    "status": "preview",
912    "submitted_by": {
913        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
914        "title": "Ryan Corces"
915    },
916    "summary": "Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy",
917    "taxa": "Homo sapiens",
918    "upper_bound_age": 83,
919    "upper_bound_age_in_hours": 727080,
920    "uuid": "1e69aa06-02c4-406f-88e8-e47c68437c4f",
921    "virtual": false
922}