{
"@context": "/terms/",
"@id": "/tissues/IGVFSM4851SEAT/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4851SEAT",
"age": "85",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN1554_CING"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM4851SEAT](/tissues/IGVFSM4851SEAT/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM4851SEAT/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM4851SEAT](/tissues/IGVFSM4851SEAT/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM4851SEAT/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T04:14:35.475884+00:00",
"date_obtained": "2023-03-09",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO0909BNTN/",
"accession": "IGVFDO0909BNTN",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS3148PUJM/",
"accession": "IGVFDS3148PUJM",
"aliases": [
"igvf:corces_measurementSet_X042_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0551JWHB/",
"accession": "IGVFDS0551JWHB",
"aliases": [
"igvf:corces_measurementSet_X042_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6059WKSH/",
"accession": "IGVFDS6059WKSH",
"aliases": [
"igvf:corces_measurementSet_X042_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5672IBLK/",
"accession": "IGVFDS5672IBLK",
"aliases": [
"igvf:corces_measurementSet_X042_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5571QAYO/",
"accession": "IGVFDS5571QAYO",
"aliases": [
"igvf:corces_measurementSet_X042_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8148USUN/",
"accession": "IGVFDS8148USUN",
"aliases": [
"igvf:corces_measurementSet_X042_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3141FRLK/",
"accession": "IGVFDS3141FRLK",
"aliases": [
"igvf:corces_measurementSet_X042_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6532IRJT/",
"accession": "IGVFDS6532IRJT",
"aliases": [
"igvf:corces_measurementSet_X042_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6932ECNS/",
"accession": "IGVFDS6932ECNS",
"aliases": [
"igvf:corces_measurementSet_X042_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8894MIXR/",
"accession": "IGVFDS8894MIXR",
"aliases": [
"igvf:corces_measurementSet_X042_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0978UQYD/",
"accession": "IGVFDS0978UQYD",
"aliases": [
"igvf:corces_measurementSet_X042_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2377SEOL/",
"accession": "IGVFDS2377SEOL",
"aliases": [
"igvf:corces_measurementSet_X042_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3959TIPT/",
"accession": "IGVFDS3959TIPT",
"aliases": [
"igvf:corces_measurementSet_X042_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8659VRHH/",
"accession": "IGVFDS8659VRHH",
"aliases": [
"igvf:corces_measurementSet_X042_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1395GBFX/",
"accession": "IGVFDS1395GBFX",
"aliases": [
"igvf:corces_measurementSet_X042_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8219ZWGY/",
"accession": "IGVFDS8219ZWGY",
"aliases": [
"igvf:corces_measurementSet_X042_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8584HIUA/",
"accession": "IGVFDS8584HIUA",
"aliases": [
"igvf:corces_measurementSet_RP022_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2368FBSS/",
"accession": "IGVFDS2368FBSS",
"aliases": [
"igvf:corces_measurementSet_RP022_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1107APTR/",
"accession": "IGVFDS1107APTR",
"aliases": [
"igvf:corces_measurementSet_RP022_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1974AEPV/",
"accession": "IGVFDS1974AEPV",
"aliases": [
"igvf:corces_measurementSet_RP022_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2327LLPB/",
"accession": "IGVFDS2327LLPB",
"aliases": [
"igvf:corces_measurementSet_RP022_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9414EOWY/",
"accession": "IGVFDS9414EOWY",
"aliases": [
"igvf:corces_measurementSet_RP022_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3039QGLY/",
"accession": "IGVFDS3039QGLY",
"aliases": [
"igvf:corces_measurementSet_RP022_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2313JSJI/",
"accession": "IGVFDS2313JSJI",
"aliases": [
"igvf:corces_measurementSet_RP022_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2066AADV/",
"accession": "IGVFDS2066AADV",
"aliases": [
"igvf:corces_measurementSet_RP022_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8820POOK/",
"accession": "IGVFDS8820POOK",
"aliases": [
"igvf:corces_measurementSet_RP022_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3905KJMK/",
"accession": "IGVFDS3905KJMK",
"aliases": [
"igvf:corces_measurementSet_RP022_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2046NRAM/",
"accession": "IGVFDS2046NRAM",
"aliases": [
"igvf:corces_measurementSet_RP022_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2617RWYL/",
"accession": "IGVFDS2617RWYL",
"aliases": [
"igvf:corces_measurementSet_RP022_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8565TJGH/",
"accession": "IGVFDS8565TJGH",
"aliases": [
"igvf:corces_measurementSet_RP022_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6695DKRC/",
"accession": "IGVFDS6695DKRC",
"aliases": [
"igvf:corces_measurementSet_RP022_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2621IQYM/",
"accession": "IGVFDS2621IQYM",
"aliases": [
"igvf:corces_measurementSet_RP022_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 85,
"lower_bound_age_in_hours": 744600,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM2480DKQY/",
"accession": "IGVFSM2480DKQY",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1132ELYG/",
"accession": "IGVFSM1132ELYG",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3739CWYU/",
"accession": "IGVFSM3739CWYU",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6255JGZM/",
"accession": "IGVFSM6255JGZM",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1167MABH/",
"accession": "IGVFSM1167MABH",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2293QQTO/",
"accession": "IGVFSM2293QQTO",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8971IRDZ/",
"accession": "IGVFSM8971IRDZ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9775XYEX/",
"accession": "IGVFSM9775XYEX",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1985AQFP/",
"accession": "IGVFSM1985AQFP",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1950JZPT/",
"accession": "IGVFSM1950JZPT",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4237TLBF/",
"accession": "IGVFSM4237TLBF",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2977RQQH/",
"accession": "IGVFSM2977RQQH",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7770KKPO/",
"accession": "IGVFSM7770KKPO",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2706TRTW/",
"accession": "IGVFSM2706TRTW",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2563FYDL/",
"accession": "IGVFSM2563FYDL",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM5225FGMJ/",
"accession": "IGVFSM5225FGMJ",
"status": "preview"
}
],
"origin_of": [],
"parts": [],
"pmi": 238,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002740/",
"status": "preview",
"term_name": "posterior cingulate gyrus"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease",
"taxa": "Homo sapiens",
"upper_bound_age": 85,
"upper_bound_age_in_hours": 744600,
"uuid": "8d6d2a41-9990-4daa-8825-090ad18f967c",
"virtual": false
}