posterior cingulate gyrus — IGVFSM4712OAMJ

1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM4712OAMJ/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM4712OAMJ",
11    "age": "90 or above",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1329_CING"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM4712OAMJ](/tissues/IGVFSM4712OAMJ/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM4712OAMJ/"
25            },
26            {
27                "category": "mismatched status",
28                "detail": "Preview tissue [IGVFSM4712OAMJ](/tissues/IGVFSM4712OAMJ/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_item_status",
32                "path": "/tissues/IGVFSM4712OAMJ/"
33            },
34            {
35                "category": "missing CCF ID",
36                "detail": "Tissue [IGVFSM4712OAMJ](/tissues/IGVFSM4712OAMJ/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
37                "level": 30,
38                "level_name": "INTERNAL_ACTION",
39                "name": "audit_tissue_ccf_id",
40                "path": "/tissues/IGVFSM4712OAMJ/"
41            }
42        ]
43    },
44    "award": {
45        "@id": "/awards/HG012076/",
46        "component": "mapping"
47    },
48    "classifications": [
49        "tissue"
50    ],
51    "creation_timestamp": "2025-03-19T04:09:15.771213+00:00",
52    "date_obtained": "2022-11-08",
53    "disease_terms": [
54        {
55            "@id": "/phenotype-terms/DOID_14330/",
56            "status": "in progress",
57            "term_name": "Parkinson's disease"
58        },
59        {
60            "@id": "/phenotype-terms/DOID_9246/",
61            "status": "in progress",
62            "term_name": "cerebral amyloid angiopathy"
63        }
64    ],
65    "donors": [
66        {
67            "@id": "/human-donors/IGVFDO6335EDSP/",
68            "accession": "IGVFDO6335EDSP",
69            "ethnicities": [
70                "European"
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72            "status": "preview"
73        }
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83            "lab": {
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85            },
86            "preferred_assay_title": "10x multiome",
87            "status": "preview",
88            "summary": "single-nucleus ATAC-seq (10x multiome)"
89        },
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101            "status": "preview",
102            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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112                "title": "Ryan Corces, Gladstone Institute UCSF"
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114            "preferred_assay_title": "10x multiome",
115            "status": "preview",
116            "summary": "single-nucleus ATAC-seq (10x multiome)"
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130            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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139            "lab": {
140                "title": "Ryan Corces, Gladstone Institute UCSF"
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142            "preferred_assay_title": "10x multiome",
143            "status": "preview",
144            "summary": "single-nucleus ATAC-seq (10x multiome)"
145        },
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154                "title": "Ryan Corces, Gladstone Institute UCSF"
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156            "preferred_assay_title": "10x multiome",
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158            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
159        },
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182                "title": "Ryan Corces, Gladstone Institute UCSF"
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195            "lab": {
196                "title": "Ryan Corces, Gladstone Institute UCSF"
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200            "summary": "single-nucleus ATAC-seq (10x multiome)"
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210                "title": "Ryan Corces, Gladstone Institute UCSF"
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223            "lab": {
224                "title": "Ryan Corces, Gladstone Institute UCSF"
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227            "status": "preview",
228            "summary": "single-nucleus ATAC-seq (10x multiome)"
229        },
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238                "title": "Ryan Corces, Gladstone Institute UCSF"
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242            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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252                "title": "Ryan Corces, Gladstone Institute UCSF"
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256            "summary": "single-nucleus ATAC-seq (10x multiome)"
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266                "title": "Ryan Corces, Gladstone Institute UCSF"
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280                "title": "Ryan Corces, Gladstone Institute UCSF"
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294                "title": "Ryan Corces, Gladstone Institute UCSF"
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308                "title": "Ryan Corces, Gladstone Institute UCSF"
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322                "title": "Ryan Corces, Gladstone Institute UCSF"
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326            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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336                "title": "Ryan Corces, Gladstone Institute UCSF"
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350                "title": "Ryan Corces, Gladstone Institute UCSF"
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411        }
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413    "institutional_certificates": [
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416            "certificate_identifier": "IP115-05",
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418            "status": "in progress"
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423        "title": "Ryan Corces, Gladstone Institute UCSF"
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425    "lower_bound_age": 90,
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468        {
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471            "status": "preview"
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483        {
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486            "status": "preview"
487        }
488    ],
489    "origin_of": [],
490    "parts": [],
491    "pmi": 135,
492    "pmi_units": "minute",
493    "pooled_in": [],
494    "preservation_method": "flash-freezing",
495    "protocols": [
496        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
497    ],
498    "sample_terms": [
499        {
500            "@id": "/sample-terms/UBERON_0002740/",
501            "status": "preview",
502            "term_name": "posterior cingulate gyrus"
503        }
504    ],
505    "schema_version": "21",
506    "sex": "male",
507    "sorted_fractions": [],
508    "sources": [
509        {
510            "@id": "/sources/banner-health/",
511            "status": "released",
512            "title": "Banner Health"
513        }
514    ],
515    "status": "preview",
516    "submitted_by": {
517        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
518        "title": "Ryan Corces"
519    },
520    "summary": "Homo sapiens (male, 90 or above years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy",
521    "taxa": "Homo sapiens",
522    "upper_bound_age": 90,
523    "upper_bound_age_in_hours": 788400,
524    "uuid": "c744f86a-3e0a-492e-b3b3-9d1720a3b38f",
525    "virtual": false
526}