middle temporal gyrus — IGVFSM4701WJFI

preview
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM4701WJFI/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM4701WJFI",
11    "age": "85",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1083_MTG"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM4701WJFI](/tissues/IGVFSM4701WJFI/) has in progress subobject phenotype term [DOID_0080832](/phenotype-terms/DOID_0080832/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM4701WJFI/"
25            },
26            {
27                "category": "mismatched status",
28                "detail": "Preview tissue [IGVFSM4701WJFI](/tissues/IGVFSM4701WJFI/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_item_status",
32                "path": "/tissues/IGVFSM4701WJFI/"
33            },
34            {
35                "category": "missing CCF ID",
36                "detail": "Tissue [IGVFSM4701WJFI](/tissues/IGVFSM4701WJFI/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
37                "level": 30,
38                "level_name": "INTERNAL_ACTION",
39                "name": "audit_tissue_ccf_id",
40                "path": "/tissues/IGVFSM4701WJFI/"
41            }
42        ]
43    },
44    "award": {
45        "@id": "/awards/HG012076/",
46        "component": "mapping"
47    },
48    "classifications": [
49        "tissue"
50    ],
51    "creation_timestamp": "2025-03-19T04:11:12.422036+00:00",
52    "date_obtained": "2022-12-14",
53    "disease_terms": [
54        {
55            "@id": "/phenotype-terms/DOID_14330/",
56            "status": "in progress",
57            "term_name": "Parkinson's disease"
58        },
59        {
60            "@id": "/phenotype-terms/DOID_0080832/",
61            "status": "in progress",
62            "term_name": "mild cognitive impairment"
63        }
64    ],
65    "donors": [
66        {
67            "@id": "/human-donors/IGVFDO3500WGWY/",
68            "accession": "IGVFDO3500WGWY",
69            "ethnicities": [
70                "European"
71            ],
72            "status": "preview"
73        }
74    ],
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81            ],
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83            "lab": {
84                "title": "Ryan Corces, Gladstone Institute UCSF"
85            },
86            "preferred_assay_title": "10x multiome",
87            "status": "preview",
88            "summary": "single-nucleus ATAC-seq (10x multiome)"
89        },
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96            "file_set_type": "experimental data",
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98                "title": "Ryan Corces, Gladstone Institute UCSF"
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100            "preferred_assay_title": "10x multiome",
101            "status": "preview",
102            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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111            "lab": {
112                "title": "Ryan Corces, Gladstone Institute UCSF"
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114            "preferred_assay_title": "10x multiome",
115            "status": "preview",
116            "summary": "single-nucleus ATAC-seq (10x multiome)"
117        },
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126                "title": "Ryan Corces, Gladstone Institute UCSF"
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128            "preferred_assay_title": "10x multiome",
129            "status": "preview",
130            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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139            "lab": {
140                "title": "Ryan Corces, Gladstone Institute UCSF"
141            },
142            "preferred_assay_title": "10x multiome",
143            "status": "preview",
144            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
145        },
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153            "lab": {
154                "title": "Ryan Corces, Gladstone Institute UCSF"
155            },
156            "preferred_assay_title": "10x multiome",
157            "status": "preview",
158            "summary": "single-nucleus ATAC-seq (10x multiome)"
159        },
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167            "lab": {
168                "title": "Ryan Corces, Gladstone Institute UCSF"
169            },
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171            "status": "preview",
172            "summary": "single-nucleus ATAC-seq (10x multiome)"
173        },
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178                "igvf:corces_measurementSet_X025_G6_RNA"
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181            "lab": {
182                "title": "Ryan Corces, Gladstone Institute UCSF"
183            },
184            "preferred_assay_title": "10x multiome",
185            "status": "preview",
186            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
187        },
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195            "lab": {
196                "title": "Ryan Corces, Gladstone Institute UCSF"
197            },
198            "preferred_assay_title": "10x multiome",
199            "status": "preview",
200            "summary": "single-nucleus ATAC-seq (10x multiome)"
201        },
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210                "title": "Ryan Corces, Gladstone Institute UCSF"
211            },
212            "preferred_assay_title": "10x multiome",
213            "status": "preview",
214            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
215        },
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223            "lab": {
224                "title": "Ryan Corces, Gladstone Institute UCSF"
225            },
226            "preferred_assay_title": "10x multiome",
227            "status": "preview",
228            "summary": "single-nucleus ATAC-seq (10x multiome)"
229        },
230        {
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234                "igvf:corces_measurementSet_X025_G1_RNA"
235            ],
236            "file_set_type": "experimental data",
237            "lab": {
238                "title": "Ryan Corces, Gladstone Institute UCSF"
239            },
240            "preferred_assay_title": "10x multiome",
241            "status": "preview",
242            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
243        },
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250            "file_set_type": "experimental data",
251            "lab": {
252                "title": "Ryan Corces, Gladstone Institute UCSF"
253            },
254            "preferred_assay_title": "10x multiome",
255            "status": "preview",
256            "summary": "single-nucleus ATAC-seq (10x multiome)"
257        },
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266                "title": "Ryan Corces, Gladstone Institute UCSF"
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280                "title": "Ryan Corces, Gladstone Institute UCSF"
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282            "preferred_assay_title": "10x multiome",
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294                "title": "Ryan Corces, Gladstone Institute UCSF"
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308                "title": "Ryan Corces, Gladstone Institute UCSF"
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312            "summary": "single-nucleus ATAC-seq (10x multiome)"
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322                "title": "Ryan Corces, Gladstone Institute UCSF"
323            },
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325            "status": "preview",
326            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
327        },
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335            "lab": {
336                "title": "Ryan Corces, Gladstone Institute UCSF"
337            },
338            "preferred_assay_title": "10x multiome",
339            "status": "preview",
340            "summary": "single-nucleus ATAC-seq (10x multiome)"
341        },
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350                "title": "Ryan Corces, Gladstone Institute UCSF"
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354            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
355        },
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363            "lab": {
364                "title": "Ryan Corces, Gladstone Institute UCSF"
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367            "status": "preview",
368            "summary": "single-nucleus ATAC-seq (10x multiome)"
369        },
370        {
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376            "file_set_type": "experimental data",
377            "lab": {
378                "title": "Ryan Corces, Gladstone Institute UCSF"
379            },
380            "preferred_assay_title": "10x multiome",
381            "status": "preview",
382            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
383        }
384    ],
385    "institutional_certificates": [
386        {
387            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
388            "certificate_identifier": "IP115-05",
389            "controlled_access": false,
390            "status": "in progress"
391        }
392    ],
393    "lab": {
394        "@id": "/labs/ryan-corces/",
395        "title": "Ryan Corces, Gladstone Institute UCSF"
396    },
397    "lower_bound_age": 85,
398    "lower_bound_age_in_hours": 744600,
399    "multiplexed_in": [
400        {
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402            "accession": "IGVFSM2452FKKK",
403            "status": "preview"
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413            "status": "preview"
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418            "status": "preview"
419        },
420        {
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422            "accession": "IGVFSM5411LEQJ",
423            "status": "preview"
424        },
425        {
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427            "accession": "IGVFSM7687WPSD",
428            "status": "in progress"
429        },
430        {
431            "@id": "/multiplexed-samples/IGVFSM6254TPHT/",
432            "accession": "IGVFSM6254TPHT",
433            "status": "preview"
434        },
435        {
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437            "accession": "IGVFSM7611BPOR",
438            "status": "preview"
439        },
440        {
441            "@id": "/multiplexed-samples/IGVFSM6377ARDR/",
442            "accession": "IGVFSM6377ARDR",
443            "status": "preview"
444        },
445        {
446            "@id": "/multiplexed-samples/IGVFSM8995INHU/",
447            "accession": "IGVFSM8995INHU",
448            "status": "preview"
449        },
450        {
451            "@id": "/multiplexed-samples/IGVFSM0214EVMC/",
452            "accession": "IGVFSM0214EVMC",
453            "status": "preview"
454        },
455        {
456            "@id": "/multiplexed-samples/IGVFSM6067ILMK/",
457            "accession": "IGVFSM6067ILMK",
458            "status": "preview"
459        }
460    ],
461    "origin_of": [],
462    "parts": [],
463    "pmi": 165,
464    "pmi_units": "minute",
465    "pooled_in": [],
466    "preservation_method": "flash-freezing",
467    "protocols": [
468        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
469    ],
470    "sample_terms": [
471        {
472            "@id": "/sample-terms/UBERON_0002771/",
473            "status": "preview",
474            "term_name": "middle temporal gyrus"
475        }
476    ],
477    "schema_version": "21",
478    "sex": "male",
479    "sorted_fractions": [],
480    "sources": [
481        {
482            "@id": "/sources/banner-health/",
483            "status": "released",
484            "title": "Banner Health"
485        }
486    ],
487    "status": "preview",
488    "submitted_by": {
489        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
490        "title": "Ryan Corces"
491    },
492    "summary": "Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease, mild cognitive impairment",
493    "taxa": "Homo sapiens",
494    "upper_bound_age": 85,
495    "upper_bound_age_in_hours": 744600,
496    "uuid": "1cff4939-53d3-4709-ae0d-edea63d8b55c",
497    "virtual": false
498}