cerebellar cortex — IGVFSM4681LKXB

1{
2    "@context": "/terms/",
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4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM4681LKXB",
11    "age": "80",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN0315_CBL"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing CCF ID",
20                "detail": "Tissue [IGVFSM4681LKXB](/tissues/IGVFSM4681LKXB/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_tissue_ccf_id",
24                "path": "/tissues/IGVFSM4681LKXB/"
25            }
26        ]
27    },
28    "award": {
29        "@id": "/awards/HG012076/",
30        "component": "mapping"
31    },
32    "classifications": [
33        "tissue"
34    ],
35    "creation_timestamp": "2025-03-19T04:14:53.779091+00:00",
36    "date_obtained": "2023-03-09",
37    "donors": [
38        {
39            "@id": "/human-donors/IGVFDO8584FBOT/",
40            "accession": "IGVFDO8584FBOT",
41            "ethnicities": [
42                "European"
43            ],
44            "status": "preview"
45        }
46    ],
47    "file_sets": [
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53            ],
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55            "lab": {
56                "title": "Ryan Corces, Gladstone Institute UCSF"
57            },
58            "preferred_assay_title": "10x multiome",
59            "status": "preview",
60            "summary": "single-nucleus ATAC-seq (10x multiome)"
61        },
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65            "aliases": [
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67            ],
68            "file_set_type": "experimental data",
69            "lab": {
70                "title": "Ryan Corces, Gladstone Institute UCSF"
71            },
72            "preferred_assay_title": "10x multiome",
73            "status": "preview",
74            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
75        },
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83            "lab": {
84                "title": "Ryan Corces, Gladstone Institute UCSF"
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88            "summary": "single-nucleus ATAC-seq (10x multiome)"
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96            "file_set_type": "experimental data",
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98                "title": "Ryan Corces, Gladstone Institute UCSF"
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100            "preferred_assay_title": "10x multiome",
101            "status": "preview",
102            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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111            "lab": {
112                "title": "Ryan Corces, Gladstone Institute UCSF"
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114            "preferred_assay_title": "10x multiome",
115            "status": "preview",
116            "summary": "single-nucleus ATAC-seq (10x multiome)"
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125            "lab": {
126                "title": "Ryan Corces, Gladstone Institute UCSF"
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128            "preferred_assay_title": "10x multiome",
129            "status": "preview",
130            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
131        },
132        {
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139            "lab": {
140                "title": "Ryan Corces, Gladstone Institute UCSF"
141            },
142            "preferred_assay_title": "10x multiome",
143            "status": "preview",
144            "summary": "single-nucleus ATAC-seq (10x multiome)"
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153            "lab": {
154                "title": "Ryan Corces, Gladstone Institute UCSF"
155            },
156            "preferred_assay_title": "10x multiome",
157            "status": "preview",
158            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
159        },
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167            "lab": {
168                "title": "Ryan Corces, Gladstone Institute UCSF"
169            },
170            "preferred_assay_title": "10x multiome",
171            "status": "preview",
172            "summary": "single-nucleus ATAC-seq (10x multiome)"
173        },
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182                "title": "Ryan Corces, Gladstone Institute UCSF"
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186            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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196                "title": "Ryan Corces, Gladstone Institute UCSF"
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200            "summary": "single-nucleus ATAC-seq (10x multiome)"
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210                "title": "Ryan Corces, Gladstone Institute UCSF"
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213            "status": "preview",
214            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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223            "lab": {
224                "title": "Ryan Corces, Gladstone Institute UCSF"
225            },
226            "preferred_assay_title": "10x multiome",
227            "status": "preview",
228            "summary": "single-nucleus ATAC-seq (10x multiome)"
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237            "lab": {
238                "title": "Ryan Corces, Gladstone Institute UCSF"
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240            "preferred_assay_title": "10x multiome",
241            "status": "preview",
242            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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251            "lab": {
252                "title": "Ryan Corces, Gladstone Institute UCSF"
253            },
254            "preferred_assay_title": "10x multiome",
255            "status": "preview",
256            "summary": "single-nucleus ATAC-seq (10x multiome)"
257        },
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266                "title": "Ryan Corces, Gladstone Institute UCSF"
267            },
268            "preferred_assay_title": "10x multiome",
269            "status": "preview",
270            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
271        }
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273    "institutional_certificates": [
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275            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
276            "certificate_identifier": "IP115-05",
277            "controlled_access": false,
278            "status": "in progress"
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280    ],
281    "lab": {
282        "@id": "/labs/ryan-corces/",
283        "title": "Ryan Corces, Gladstone Institute UCSF"
284    },
285    "lower_bound_age": 80,
286    "lower_bound_age_in_hours": 700800,
287    "multiplexed_in": [
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306            "status": "preview"
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316            "status": "preview"
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320            "accession": "IGVFSM2344WXDM",
321            "status": "preview"
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323        {
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326            "status": "preview"
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328    ],
329    "origin_of": [],
330    "parts": [],
331    "pmi": 195,
332    "pmi_units": "minute",
333    "pooled_in": [],
334    "preservation_method": "flash-freezing",
335    "protocols": [
336        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
337    ],
338    "sample_terms": [
339        {
340            "@id": "/sample-terms/UBERON_0002129/",
341            "status": "preview",
342            "term_name": "cerebellar cortex"
343        }
344    ],
345    "schema_version": "21",
346    "sex": "male",
347    "sorted_fractions": [],
348    "sources": [
349        {
350            "@id": "/sources/banner-health/",
351            "status": "released",
352            "title": "Banner Health"
353        }
354    ],
355    "status": "preview",
356    "submitted_by": {
357        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
358        "title": "Ryan Corces"
359    },
360    "summary": "Homo sapiens (male, 80 years) cerebellar cortex tissue",
361    "taxa": "Homo sapiens",
362    "upper_bound_age": 80,
363    "upper_bound_age_in_hours": 700800,
364    "uuid": "c5778235-69aa-49ba-a324-5efa4c932ee8",
365    "virtual": false
366}