{
"@context": "/terms/",
"@id": "/tissues/IGVFSM4606NZEY/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4606NZEY",
"age": "70",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN1637_MTG_B1"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM4606NZEY](/tissues/IGVFSM4606NZEY/) has in progress subobject phenotype term [DOID_0080832](/phenotype-terms/DOID_0080832/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM4606NZEY/"
},
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM4606NZEY](/tissues/IGVFSM4606NZEY/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM4606NZEY/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM4606NZEY](/tissues/IGVFSM4606NZEY/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM4606NZEY/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T12:57:19.961490+00:00",
"date_obtained": "2022-10-11",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO9028PIDF/",
"accession": "IGVFDO9028PIDF",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS3625CDRZ/",
"accession": "IGVFDS3625CDRZ",
"aliases": [
"igvf:corces_measurementSet_X007_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0631LOBZ/",
"accession": "IGVFDS0631LOBZ",
"aliases": [
"igvf:corces_measurementSet_X007_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6654EGOB/",
"accession": "IGVFDS6654EGOB",
"aliases": [
"igvf:corces_measurementSet_X007_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2136ZXKP/",
"accession": "IGVFDS2136ZXKP",
"aliases": [
"igvf:corces_measurementSet_X007_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2682JDFY/",
"accession": "IGVFDS2682JDFY",
"aliases": [
"igvf:corces_measurementSet_X007_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5908UEFP/",
"accession": "IGVFDS5908UEFP",
"aliases": [
"igvf:corces_measurementSet_X007_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5996MZTB/",
"accession": "IGVFDS5996MZTB",
"aliases": [
"igvf:corces_measurementSet_X007_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3535MFMA/",
"accession": "IGVFDS3535MFMA",
"aliases": [
"igvf:corces_measurementSet_X007_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3465KQMX/",
"accession": "IGVFDS3465KQMX",
"aliases": [
"igvf:corces_measurementSet_X007_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3133JMDG/",
"accession": "IGVFDS3133JMDG",
"aliases": [
"igvf:corces_measurementSet_X007_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2421OHEM/",
"accession": "IGVFDS2421OHEM",
"aliases": [
"igvf:corces_measurementSet_X007_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9815DKHR/",
"accession": "IGVFDS9815DKHR",
"aliases": [
"igvf:corces_measurementSet_X007_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4171WSHF/",
"accession": "IGVFDS4171WSHF",
"aliases": [
"igvf:corces_measurementSet_X007_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7877AAFJ/",
"accession": "IGVFDS7877AAFJ",
"aliases": [
"igvf:corces_measurementSet_X007_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8434LUAX/",
"accession": "IGVFDS8434LUAX",
"aliases": [
"igvf:corces_measurementSet_X007_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0663JRLJ/",
"accession": "IGVFDS0663JRLJ",
"aliases": [
"igvf:corces_measurementSet_X007_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3379JUSL/",
"accession": "IGVFDS3379JUSL",
"aliases": [
"igvf:corces_measurementSet_RP001_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0571RKTK/",
"accession": "IGVFDS0571RKTK",
"aliases": [
"igvf:corces_measurementSet_RP001_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6751EKJB/",
"accession": "IGVFDS6751EKJB",
"aliases": [
"igvf:corces_measurementSet_RP001_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4817OHKN/",
"accession": "IGVFDS4817OHKN",
"aliases": [
"igvf:corces_measurementSet_RP001_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6182VLTG/",
"accession": "IGVFDS6182VLTG",
"aliases": [
"igvf:corces_measurementSet_RP001_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9948CJNC/",
"accession": "IGVFDS9948CJNC",
"aliases": [
"igvf:corces_measurementSet_RP001_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7317MFVE/",
"accession": "IGVFDS7317MFVE",
"aliases": [
"igvf:corces_measurementSet_RP001_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2903AZNH/",
"accession": "IGVFDS2903AZNH",
"aliases": [
"igvf:corces_measurementSet_RP001_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6183YJRV/",
"accession": "IGVFDS6183YJRV",
"aliases": [
"igvf:corces_measurementSet_RP001_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1977MLOK/",
"accession": "IGVFDS1977MLOK",
"aliases": [
"igvf:corces_measurementSet_RP001_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1728ZLAX/",
"accession": "IGVFDS1728ZLAX",
"aliases": [
"igvf:corces_measurementSet_RP001_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8045KMMQ/",
"accession": "IGVFDS8045KMMQ",
"aliases": [
"igvf:corces_measurementSet_RP001_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4343EECQ/",
"accession": "IGVFDS4343EECQ",
"aliases": [
"igvf:corces_measurementSet_RP001_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5492IFNK/",
"accession": "IGVFDS5492IFNK",
"aliases": [
"igvf:corces_measurementSet_RP001_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2419ECQE/",
"accession": "IGVFDS2419ECQE",
"aliases": [
"igvf:corces_measurementSet_RP001_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4024PLUG/",
"accession": "IGVFDS4024PLUG",
"aliases": [
"igvf:corces_measurementSet_RP001_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 70,
"lower_bound_age_in_hours": 613200,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM7838UKZT/",
"accession": "IGVFSM7838UKZT",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM5871OTYA/",
"accession": "IGVFSM5871OTYA",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9600LBOY/",
"accession": "IGVFSM9600LBOY",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6141OLJP/",
"accession": "IGVFSM6141OLJP",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8548OQWB/",
"accession": "IGVFSM8548OQWB",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1022ULLW/",
"accession": "IGVFSM1022ULLW",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2665DLGD/",
"accession": "IGVFSM2665DLGD",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6282VKBQ/",
"accession": "IGVFSM6282VKBQ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8767PGTT/",
"accession": "IGVFSM8767PGTT",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4595ROAA/",
"accession": "IGVFSM4595ROAA",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7927MDCD/",
"accession": "IGVFSM7927MDCD",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8255WJLC/",
"accession": "IGVFSM8255WJLC",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7329LEXT/",
"accession": "IGVFSM7329LEXT",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7076WLCU/",
"accession": "IGVFSM7076WLCU",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4020DOCK/",
"accession": "IGVFSM4020DOCK",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7915KUKE/",
"accession": "IGVFSM7915KUKE",
"status": "preview"
}
],
"origin_of": [],
"part_of": "/tissues/IGVFSM9505DSRE/",
"parts": [],
"pmi": 234,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 70 years) middle temporal gyrus tissue associated with Parkinson's disease, mild cognitive impairment",
"taxa": "Homo sapiens",
"upper_bound_age": 70,
"upper_bound_age_in_hours": 613200,
"uuid": "871f8822-7b49-41a1-a972-2bb61571e9e8",
"virtual": false
}