{
"@context": "/terms/",
"@id": "/tissues/IGVFSM4554QFXU/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4554QFXU",
"age": "84",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN1805_MTG"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM4554QFXU](/tissues/IGVFSM4554QFXU/) has in progress subobject phenotype term [DOID_0080832](/phenotype-terms/DOID_0080832/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM4554QFXU/"
},
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM4554QFXU](/tissues/IGVFSM4554QFXU/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM4554QFXU/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM4554QFXU](/tissues/IGVFSM4554QFXU/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM4554QFXU/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T04:14:39.121698+00:00",
"date_obtained": "2023-03-09",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO0565OSFT/",
"accession": "IGVFDO0565OSFT",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS3148PUJM/",
"accession": "IGVFDS3148PUJM",
"aliases": [
"igvf:corces_measurementSet_X042_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0551JWHB/",
"accession": "IGVFDS0551JWHB",
"aliases": [
"igvf:corces_measurementSet_X042_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6059WKSH/",
"accession": "IGVFDS6059WKSH",
"aliases": [
"igvf:corces_measurementSet_X042_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5672IBLK/",
"accession": "IGVFDS5672IBLK",
"aliases": [
"igvf:corces_measurementSet_X042_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5571QAYO/",
"accession": "IGVFDS5571QAYO",
"aliases": [
"igvf:corces_measurementSet_X042_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8148USUN/",
"accession": "IGVFDS8148USUN",
"aliases": [
"igvf:corces_measurementSet_X042_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3141FRLK/",
"accession": "IGVFDS3141FRLK",
"aliases": [
"igvf:corces_measurementSet_X042_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6532IRJT/",
"accession": "IGVFDS6532IRJT",
"aliases": [
"igvf:corces_measurementSet_X042_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6932ECNS/",
"accession": "IGVFDS6932ECNS",
"aliases": [
"igvf:corces_measurementSet_X042_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8894MIXR/",
"accession": "IGVFDS8894MIXR",
"aliases": [
"igvf:corces_measurementSet_X042_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0978UQYD/",
"accession": "IGVFDS0978UQYD",
"aliases": [
"igvf:corces_measurementSet_X042_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2377SEOL/",
"accession": "IGVFDS2377SEOL",
"aliases": [
"igvf:corces_measurementSet_X042_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3959TIPT/",
"accession": "IGVFDS3959TIPT",
"aliases": [
"igvf:corces_measurementSet_X042_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8659VRHH/",
"accession": "IGVFDS8659VRHH",
"aliases": [
"igvf:corces_measurementSet_X042_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1395GBFX/",
"accession": "IGVFDS1395GBFX",
"aliases": [
"igvf:corces_measurementSet_X042_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8219ZWGY/",
"accession": "IGVFDS8219ZWGY",
"aliases": [
"igvf:corces_measurementSet_X042_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2943LQHU/",
"accession": "IGVFDS2943LQHU",
"aliases": [
"igvf:corces_measurementSet_RP014_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3707VRFM/",
"accession": "IGVFDS3707VRFM",
"aliases": [
"igvf:corces_measurementSet_RP014_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7788KKVV/",
"accession": "IGVFDS7788KKVV",
"aliases": [
"igvf:corces_measurementSet_RP014_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3071BBZO/",
"accession": "IGVFDS3071BBZO",
"aliases": [
"igvf:corces_measurementSet_RP014_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3473OBBZ/",
"accession": "IGVFDS3473OBBZ",
"aliases": [
"igvf:corces_measurementSet_RP014_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5184YEZB/",
"accession": "IGVFDS5184YEZB",
"aliases": [
"igvf:corces_measurementSet_RP014_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5508ONPS/",
"accession": "IGVFDS5508ONPS",
"aliases": [
"igvf:corces_measurementSet_RP014_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0058HQMM/",
"accession": "IGVFDS0058HQMM",
"aliases": [
"igvf:corces_measurementSet_RP014_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3802KJSR/",
"accession": "IGVFDS3802KJSR",
"aliases": [
"igvf:corces_measurementSet_RP014_G5_ATAC"
],
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"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6353IHVX/",
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"igvf:corces_measurementSet_RP014_G5_RNA"
],
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"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9599ZHWG/",
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],
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"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
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"igvf:corces_measurementSet_RP014_G1_RNA"
],
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"lab": {
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},
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"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
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],
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},
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"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3998OHPZ/",
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"igvf:corces_measurementSet_RP014_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6041FJHB/",
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"aliases": [
"igvf:corces_measurementSet_RP014_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2731RLBA/",
"accession": "IGVFDS2731RLBA",
"aliases": [
"igvf:corces_measurementSet_RP014_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 84,
"lower_bound_age_in_hours": 735840,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM2480DKQY/",
"accession": "IGVFSM2480DKQY",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1132ELYG/",
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"status": "preview"
},
{
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},
{
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},
{
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"status": "preview"
},
{
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"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8971IRDZ/",
"accession": "IGVFSM8971IRDZ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9775XYEX/",
"accession": "IGVFSM9775XYEX",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4901QTFI/",
"accession": "IGVFSM4901QTFI",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7335HESV/",
"accession": "IGVFSM7335HESV",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7659CCOT/",
"accession": "IGVFSM7659CCOT",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8048XYHR/",
"accession": "IGVFSM8048XYHR",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM5142KRLD/",
"accession": "IGVFSM5142KRLD",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3192MEUT/",
"accession": "IGVFSM3192MEUT",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8298LTTJ/",
"accession": "IGVFSM8298LTTJ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0496VQZI/",
"accession": "IGVFSM0496VQZI",
"status": "preview"
}
],
"origin_of": [],
"parts": [],
"pmi": 180,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 84 years) middle temporal gyrus tissue associated with Parkinson's disease, mild cognitive impairment",
"taxa": "Homo sapiens",
"upper_bound_age": 84,
"upper_bound_age_in_hours": 735840,
"uuid": "46e6b6d8-6fff-47c3-9b8f-d6ab04cfb468",
"virtual": false
}