posterior cingulate gyrus — IGVFSM4511FPTE

preview
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM4511FPTE/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM4511FPTE",
11    "age": "74",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1234_CING_B1"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM4511FPTE](/tissues/IGVFSM4511FPTE/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM4511FPTE/"
25            },
26            {
27                "category": "missing CCF ID",
28                "detail": "Tissue [IGVFSM4511FPTE](/tissues/IGVFSM4511FPTE/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_tissue_ccf_id",
32                "path": "/tissues/IGVFSM4511FPTE/"
33            }
34        ]
35    },
36    "award": {
37        "@id": "/awards/HG012076/",
38        "component": "mapping"
39    },
40    "classifications": [
41        "tissue"
42    ],
43    "creation_timestamp": "2025-03-19T12:57:59.481376+00:00",
44    "date_obtained": "2023-01-04",
45    "disease_terms": [
46        {
47            "@id": "/phenotype-terms/DOID_14330/",
48            "status": "in progress",
49            "term_name": "Parkinson's disease"
50        }
51    ],
52    "donors": [
53        {
54            "@id": "/human-donors/IGVFDO7051PRHR/",
55            "accession": "IGVFDO7051PRHR",
56            "ethnicities": [
57                "European"
58            ],
59            "status": "preview"
60        }
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68            ],
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70            "lab": {
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72            },
73            "preferred_assay_title": "10x multiome",
74            "status": "preview",
75            "summary": "single-nucleus ATAC-seq (10x multiome)"
76        },
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88            "status": "preview",
89            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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102            "status": "preview",
103            "summary": "single-nucleus ATAC-seq (10x multiome)"
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116            "status": "preview",
117            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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124            ],
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126            "lab": {
127                "title": "Ryan Corces, Gladstone Institute UCSF"
128            },
129            "preferred_assay_title": "10x multiome",
130            "status": "preview",
131            "summary": "single-nucleus ATAC-seq (10x multiome)"
132        },
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138            ],
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140            "lab": {
141                "title": "Ryan Corces, Gladstone Institute UCSF"
142            },
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144            "status": "preview",
145            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
146        },
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152            ],
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155                "title": "Ryan Corces, Gladstone Institute UCSF"
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158            "status": "preview",
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160        },
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166            ],
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169                "title": "Ryan Corces, Gladstone Institute UCSF"
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171            "preferred_assay_title": "10x multiome",
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173            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
174        },
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183                "title": "Ryan Corces, Gladstone Institute UCSF"
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187            "summary": "single-nucleus ATAC-seq (10x multiome)"
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211                "title": "Ryan Corces, Gladstone Institute UCSF"
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215            "summary": "single-nucleus ATAC-seq (10x multiome)"
216        },
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225                "title": "Ryan Corces, Gladstone Institute UCSF"
226            },
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229            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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238            "lab": {
239                "title": "Ryan Corces, Gladstone Institute UCSF"
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243            "summary": "single-nucleus ATAC-seq (10x multiome)"
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253                "title": "Ryan Corces, Gladstone Institute UCSF"
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257            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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267                "title": "Ryan Corces, Gladstone Institute UCSF"
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295                "title": "Ryan Corces, Gladstone Institute UCSF"
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309                "title": "Ryan Corces, Gladstone Institute UCSF"
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313            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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323                "title": "Ryan Corces, Gladstone Institute UCSF"
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337                "title": "Ryan Corces, Gladstone Institute UCSF"
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341            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
342        },
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351                "title": "Ryan Corces, Gladstone Institute UCSF"
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355            "summary": "single-nucleus ATAC-seq (10x multiome)"
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611    "pmi": 205,
612    "pmi_units": "minute",
613    "pooled_in": [],
614    "preservation_method": "flash-freezing",
615    "protocols": [
616        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
617    ],
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628    "sources": [
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630            "@id": "/sources/banner-health/",
631            "status": "released",
632            "title": "Banner Health"
633        }
634    ],
635    "status": "preview",
636    "submitted_by": {
637        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
638        "title": "Ryan Corces"
639    },
640    "summary": "Homo sapiens (male, 74 years) posterior cingulate gyrus tissue associated with Parkinson's disease",
641    "taxa": "Homo sapiens",
642    "upper_bound_age": 74,
643    "upper_bound_age_in_hours": 648240,
644    "uuid": "4573a1df-c6a6-4c47-863c-8e757975a449",
645    "virtual": false
646}