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putamen — IGVFSM4378JIJJ
putamen — IGVFSM4378JIJJ
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Summary
Homo sapiens (male, 90 or above years) putamen tissue
Sample Terms
putamen
Sex
male
Age
90 or above years
Post-mortem Interval
205 minutes
Preservation Method
flash-freezing
Taxa
Homo sapiens
Sources
banner-health
Date Harvested
January 25, 2023
Aliases
igvf:corces_tissue_BANN1750_PUT
Protocols
https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO0411QFOF
igvf:corces_donor_BANN1750
male
Homo sapiens
File Sets
32 items
1
2
3
4
Accession
Summary
Aliases
Lab
IGVFDS0247BVMI
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP006_G5_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS0299PZQV
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP006_G7_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS0585JEMM
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP006_G2_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS0605XEYP
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X031_G5_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS0646FGSI
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP006_G7_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS0802QULQ
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP006_G4_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS1023IVXT
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_X031_G1_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS1296AIPR
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP006_G8_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS1916OYNE
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_X031_G3_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS1999RELF
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_X031_G5_ATAC
Ryan Corces, Gladstone Institute UCSF
Multiplexed In Samples
16 items
1
2
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM0804HOWT
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
IGVFSM0810GEIN
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
IGVFSM1592CVNB
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
IGVFSM2234VVAF
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
IGVFSM2981VRFX
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
IGVFSM3376RRIH
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
IGVFSM3715NVPJ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
IGVFSM5801EHME
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
IGVFSM6003RYZR
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
IGVFSM7010YPUF
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF