brain — IGVFSM4321WQTD

released
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM4321WQTD/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM4321WQTD",
11    "age": "unknown",
12    "aliases": [
13        "buenrostro-bernstein:BioSam 4965_SS-PKR 436"
14    ],
15    "audit": {
16        "INTERNAL_ACTION": [
17            {
18                "category": "missing publication",
19                "detail": "Tissue [IGVFSM4321WQTD](/tissues/IGVFSM4321WQTD/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
20                "level": 30,
21                "level_name": "INTERNAL_ACTION",
22                "name": "audit_sample_missing_publication",
23                "path": "/tissues/IGVFSM4321WQTD/"
24            }
25        ],
26        "WARNING": [
27            {
28                "category": "missing age",
29                "detail": "Tissue [IGVFSM4321WQTD](/tissues/IGVFSM4321WQTD/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
30                "level": 40,
31                "level_name": "WARNING",
32                "name": "audit_biosample_age",
33                "path": "/tissues/IGVFSM4321WQTD/"
34            }
35        ]
36    },
37    "award": {
38        "@id": "/awards/HG011986/",
39        "component": "mapping"
40    },
41    "cellular_sub_pool": "SS-PKR 436",
42    "classifications": [
43        "tissue"
44    ],
45    "creation_timestamp": "2025-03-09T15:51:31.937787+00:00",
46    "description": "Mouse Brain",
47    "donors": [
48        {
49            "@id": "/rodent-donors/IGVFDO9446AKYF/",
50            "accession": "IGVFDO9446AKYF",
51            "status": "released",
52            "strain": "C57BL/6"
53        }
54    ],
55    "file_sets": [
56        {
57            "@id": "/measurement-sets/IGVFDS4752BWME/",
58            "accession": "IGVFDS4752BWME",
59            "aliases": [
60                "buenrostro-bernstein:scRNA Lib 611"
61            ],
62            "file_set_type": "experimental data",
63            "lab": {
64                "title": "Jason Buenrostro, Broad"
65            },
66            "preferred_assay_title": "SHARE-seq",
67            "status": "released",
68            "summary": "single-cell RNA sequencing assay (SHARE-seq)"
69        },
70        {
71            "@id": "/measurement-sets/IGVFDS5083GBBF/",
72            "accession": "IGVFDS5083GBBF",
73            "aliases": [
74                "buenrostro-bernstein:scATAC Lib 1270"
75            ],
76            "file_set_type": "experimental data",
77            "lab": {
78                "title": "Jason Buenrostro, Broad"
79            },
80            "preferred_assay_title": "SHARE-seq",
81            "status": "released",
82            "summary": "single-cell ATAC-seq (SHARE-seq)"
83        },
84        {
85            "@id": "/measurement-sets/IGVFDS6289YQBN/",
86            "accession": "IGVFDS6289YQBN",
87            "aliases": [
88                "buenrostro-bernstein:scRNA Lib 601"
89            ],
90            "file_set_type": "experimental data",
91            "lab": {
92                "title": "Jason Buenrostro, Broad"
93            },
94            "preferred_assay_title": "SHARE-seq",
95            "status": "released",
96            "summary": "single-cell RNA sequencing assay (SHARE-seq)"
97        },
98        {
99            "@id": "/measurement-sets/IGVFDS7571FXYP/",
100            "accession": "IGVFDS7571FXYP",
101            "aliases": [
102                "buenrostro-bernstein:scRNA Lib 600"
103            ],
104            "file_set_type": "experimental data",
105            "lab": {
106                "title": "Jason Buenrostro, Broad"
107            },
108            "preferred_assay_title": "SHARE-seq",
109            "status": "released",
110            "summary": "single-cell RNA sequencing assay (SHARE-seq)"
111        },
112        {
113            "@id": "/measurement-sets/IGVFDS5177YHMM/",
114            "accession": "IGVFDS5177YHMM",
115            "aliases": [
116                "buenrostro-bernstein:scRNA Lib 599"
117            ],
118            "file_set_type": "experimental data",
119            "lab": {
120                "title": "Jason Buenrostro, Broad"
121            },
122            "preferred_assay_title": "SHARE-seq",
123            "status": "released",
124            "summary": "single-cell RNA sequencing assay (SHARE-seq)"
125        },
126        {
127            "@id": "/analysis-sets/IGVFDS6753PKAH/",
128            "accession": "IGVFDS6753PKAH",
129            "aliases": [
130                "buenrostro-bernstein:AnalysisSet_BioSam-4965_SS-PKR-436"
131            ],
132            "file_set_type": "intermediate analysis",
133            "lab": {
134                "title": "Jason Buenrostro, Broad"
135            },
136            "status": "in progress",
137            "summary": "SHARE-seq: alignments, fragments, index, sparse gene count matrix"
138        }
139    ],
140    "institutional_certificates": [],
141    "lab": {
142        "@id": "/labs/jason-buenrostro/",
143        "title": "Jason Buenrostro, Broad"
144    },
145    "multiplexed_in": [],
146    "origin_of": [],
147    "part_of": "/tissues/IGVFSM5971QYEZ/",
148    "parts": [],
149    "pooled_in": [],
150    "release_timestamp": "2025-03-28T21:18:35.436383+00:00",
151    "sample_terms": [
152        {
153            "@id": "/sample-terms/UBERON_0000955/",
154            "status": "released",
155            "term_name": "brain"
156        }
157    ],
158    "schema_version": "21",
159    "sex": "unspecified",
160    "sorted_fractions": [],
161    "sources": [
162        {
163            "@id": "/sources/transnetyx/",
164            "status": "released",
165            "title": "Transnetyx"
166        }
167    ],
168    "status": "released",
169    "submitted_by": {
170        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
171        "title": "Siddarth Wekhande"
172    },
173    "summary": "Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 436)",
174    "taxa": "Mus musculus",
175    "uuid": "03256a95-2197-4b29-8e9b-01f002152436",
176    "virtual": false
177}