brain — IGVFSM3932SXVT

released
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM3932SXVT/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM3932SXVT",
11    "age": "unknown",
12    "aliases": [
13        "bradley-bernstein:BioSam 4561_SS-PKR 129",
14        "buenrostro-bernstein:BioSam 4561_SS-PKR 129"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing publication",
20                "detail": "Tissue [IGVFSM3932SXVT](/tissues/IGVFSM3932SXVT/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_sample_missing_publication",
24                "path": "/tissues/IGVFSM3932SXVT/"
25            }
26        ],
27        "WARNING": [
28            {
29                "category": "missing age",
30                "detail": "Tissue [IGVFSM3932SXVT](/tissues/IGVFSM3932SXVT/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
31                "level": 40,
32                "level_name": "WARNING",
33                "name": "audit_biosample_age",
34                "path": "/tissues/IGVFSM3932SXVT/"
35            }
36        ]
37    },
38    "award": {
39        "@id": "/awards/HG011986/",
40        "component": "mapping"
41    },
42    "cellular_sub_pool": "SS-PKR 129",
43    "classifications": [
44        "tissue"
45    ],
46    "creation_timestamp": "2023-08-28T20:28:40.320257+00:00",
47    "donors": [
48        {
49            "@id": "/rodent-donors/IGVFDO1318PLKS/",
50            "accession": "IGVFDO1318PLKS",
51            "status": "released",
52            "strain": "C57BL/6"
53        }
54    ],
55    "file_sets": [
56        {
57            "@id": "/measurement-sets/IGVFDS0020LQRY/",
58            "accession": "IGVFDS0020LQRY",
59            "aliases": [
60                "bradley-bernstein:scATAC Lib 111",
61                "buenrostro-bernstein:scATAC Lib 111"
62            ],
63            "file_set_type": "experimental data",
64            "lab": {
65                "title": "Jason Buenrostro, Broad"
66            },
67            "preferred_assay_title": "SHARE-seq",
68            "status": "released",
69            "summary": "single-cell ATAC-seq (SHARE-seq)"
70        },
71        {
72            "@id": "/measurement-sets/IGVFDS5192VPKQ/",
73            "accession": "IGVFDS5192VPKQ",
74            "aliases": [
75                "bradley-bernstein:scRNA Lib 72",
76                "buenrostro-bernstein:scRNA Lib 72"
77            ],
78            "file_set_type": "experimental data",
79            "lab": {
80                "title": "Jason Buenrostro, Broad"
81            },
82            "preferred_assay_title": "SHARE-seq",
83            "status": "released",
84            "summary": "single-cell RNA sequencing assay (SHARE-seq)"
85        },
86        {
87            "@id": "/measurement-sets/IGVFDS4911ZDCJ/",
88            "accession": "IGVFDS4911ZDCJ",
89            "aliases": [
90                "bradley-bernstein:scATAC Lib 110",
91                "buenrostro-bernstein:scATAC Lib 110"
92            ],
93            "file_set_type": "experimental data",
94            "lab": {
95                "title": "Jason Buenrostro, Broad"
96            },
97            "preferred_assay_title": "SHARE-seq",
98            "status": "released",
99            "summary": "single-cell ATAC-seq (SHARE-seq)"
100        },
101        {
102            "@id": "/measurement-sets/IGVFDS8535JZRF/",
103            "accession": "IGVFDS8535JZRF",
104            "aliases": [
105                "bradley-bernstein:scRNA Lib 70",
106                "buenrostro-bernstein:scRNA Lib 70"
107            ],
108            "file_set_type": "experimental data",
109            "lab": {
110                "title": "Jason Buenrostro, Broad"
111            },
112            "preferred_assay_title": "SHARE-seq",
113            "status": "released",
114            "summary": "single-cell RNA sequencing assay (SHARE-seq)"
115        },
116        {
117            "@id": "/measurement-sets/IGVFDS3638UVNV/",
118            "accession": "IGVFDS3638UVNV",
119            "aliases": [
120                "bradley-bernstein:scATAC Lib 109",
121                "buenrostro-bernstein:scATAC Lib 109"
122            ],
123            "file_set_type": "experimental data",
124            "lab": {
125                "title": "Jason Buenrostro, Broad"
126            },
127            "preferred_assay_title": "SHARE-seq",
128            "status": "released",
129            "summary": "single-cell ATAC-seq (SHARE-seq)"
130        },
131        {
132            "@id": "/measurement-sets/IGVFDS8078FJZR/",
133            "accession": "IGVFDS8078FJZR",
134            "aliases": [
135                "bradley-bernstein:scRNA Lib 71",
136                "buenrostro-bernstein:scRNA Lib 71"
137            ],
138            "file_set_type": "experimental data",
139            "lab": {
140                "title": "Jason Buenrostro, Broad"
141            },
142            "preferred_assay_title": "SHARE-seq",
143            "status": "released",
144            "summary": "single-cell RNA sequencing assay (SHARE-seq)"
145        },
146        {
147            "@id": "/analysis-sets/IGVFDS8415FVDT/",
148            "accession": "IGVFDS8415FVDT",
149            "aliases": [
150                "buenrostro-bernstein:AnalysisSet_BioSam-4561_SS-PKR-129"
151            ],
152            "file_set_type": "intermediate analysis",
153            "lab": {
154                "title": "Jason Buenrostro, Broad"
155            },
156            "status": "in progress",
157            "summary": "SHARE-seq: alignments, fragments, index, sparse gene count matrix"
158        }
159    ],
160    "institutional_certificates": [],
161    "lab": {
162        "@id": "/labs/jason-buenrostro/",
163        "title": "Jason Buenrostro, Broad"
164    },
165    "multiplexed_in": [],
166    "origin_of": [],
167    "part_of": "/tissues/IGVFSM8906DBMQ/",
168    "parts": [],
169    "pooled_in": [],
170    "release_timestamp": "2025-03-28T21:22:30.706265+00:00",
171    "sample_terms": [
172        {
173            "@id": "/sample-terms/UBERON_0000955/",
174            "status": "released",
175            "term_name": "brain"
176        }
177    ],
178    "schema_version": "21",
179    "sex": "female",
180    "sorted_fractions": [],
181    "sources": [
182        {
183            "@id": "/sources/transnetyx/",
184            "status": "released",
185            "title": "Transnetyx"
186        }
187    ],
188    "status": "released",
189    "submitted_by": {
190        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
191        "title": "Siddarth Wekhande"
192    },
193    "summary": "Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)",
194    "taxa": "Mus musculus",
195    "uuid": "9f1ca783-2dd1-4060-9800-2add6cec5f88",
196    "virtual": false
197}