substantia nigra — IGVFSM3722WSIN

preview
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM3722WSIN/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM3722WSIN",
11    "age": "93",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1039_SN"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing CCF ID",
20                "detail": "Tissue [IGVFSM3722WSIN](/tissues/IGVFSM3722WSIN/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_tissue_ccf_id",
24                "path": "/tissues/IGVFSM3722WSIN/"
25            }
26        ]
27    },
28    "award": {
29        "@id": "/awards/HG012076/",
30        "component": "mapping"
31    },
32    "classifications": [
33        "tissue"
34    ],
35    "creation_timestamp": "2025-03-19T04:16:31.107453+00:00",
36    "date_obtained": "2022-11-08",
37    "donors": [
38        {
39            "@id": "/human-donors/IGVFDO8817BLIU/",
40            "accession": "IGVFDO8817BLIU",
41            "ethnicities": [
42                "European"
43            ],
44            "status": "preview"
45        }
46    ],
47    "file_sets": [],
48    "institutional_certificates": [
49        {
50            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
51            "certificate_identifier": "IP115-05",
52            "controlled_access": false,
53            "status": "in progress"
54        }
55    ],
56    "lab": {
57        "@id": "/labs/ryan-corces/",
58        "title": "Ryan Corces, Gladstone Institute UCSF"
59    },
60    "lower_bound_age": 93,
61    "lower_bound_age_in_hours": 814680,
62    "multiplexed_in": [],
63    "origin_of": [],
64    "parts": [
65        "/tissues/IGVFSM9768BBUO/",
66        "/tissues/IGVFSM0006SWLB/"
67    ],
68    "pmi": 180,
69    "pmi_units": "minute",
70    "pooled_in": [],
71    "preservation_method": "flash-freezing",
72    "protocols": [
73        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
74    ],
75    "sample_terms": [
76        {
77            "@id": "/sample-terms/UBERON_0002038/",
78            "status": "preview",
79            "term_name": "substantia nigra"
80        }
81    ],
82    "schema_version": "21",
83    "sex": "male",
84    "sorted_fractions": [],
85    "sources": [
86        {
87            "@id": "/sources/banner-health/",
88            "status": "released",
89            "title": "Banner Health"
90        }
91    ],
92    "status": "preview",
93    "submitted_by": {
94        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
95        "title": "Ryan Corces"
96    },
97    "summary": "Homo sapiens (male, 93 years) substantia nigra tissue",
98    "taxa": "Homo sapiens",
99    "upper_bound_age": 93,
100    "upper_bound_age_in_hours": 814680,
101    "uuid": "cb8a9084-1463-41d2-8087-37cde5722de2",
102    "virtual": false
103}