posterior cingulate gyrus — IGVFSM3534SCRZ

1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM3534SCRZ/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM3534SCRZ",
11    "age": "53",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN0950_CING"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing CCF ID",
20                "detail": "Tissue [IGVFSM3534SCRZ](/tissues/IGVFSM3534SCRZ/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_tissue_ccf_id",
24                "path": "/tissues/IGVFSM3534SCRZ/"
25            }
26        ]
27    },
28    "award": {
29        "@id": "/awards/HG012076/",
30        "component": "mapping"
31    },
32    "classifications": [
33        "tissue"
34    ],
35    "creation_timestamp": "2025-03-19T04:14:09.773066+00:00",
36    "date_obtained": "2023-02-22",
37    "donors": [
38        {
39            "@id": "/human-donors/IGVFDO2928PSUK/",
40            "accession": "IGVFDO2928PSUK",
41            "ethnicities": [
42                "European"
43            ],
44            "status": "preview"
45        }
46    ],
47    "file_sets": [
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53            ],
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55            "lab": {
56                "title": "Ryan Corces, Gladstone Institute UCSF"
57            },
58            "preferred_assay_title": "10x multiome",
59            "status": "preview",
60            "summary": "single-nucleus ATAC-seq (10x multiome)"
61        },
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65            "aliases": [
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67            ],
68            "file_set_type": "experimental data",
69            "lab": {
70                "title": "Ryan Corces, Gladstone Institute UCSF"
71            },
72            "preferred_assay_title": "10x multiome",
73            "status": "preview",
74            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
75        },
76        {
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83            "lab": {
84                "title": "Ryan Corces, Gladstone Institute UCSF"
85            },
86            "preferred_assay_title": "10x multiome",
87            "status": "preview",
88            "summary": "single-nucleus ATAC-seq (10x multiome)"
89        },
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93            "aliases": [
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98                "title": "Ryan Corces, Gladstone Institute UCSF"
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100            "preferred_assay_title": "10x multiome",
101            "status": "preview",
102            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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112                "title": "Ryan Corces, Gladstone Institute UCSF"
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114            "preferred_assay_title": "10x multiome",
115            "status": "preview",
116            "summary": "single-nucleus ATAC-seq (10x multiome)"
117        },
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124            "file_set_type": "experimental data",
125            "lab": {
126                "title": "Ryan Corces, Gladstone Institute UCSF"
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128            "preferred_assay_title": "10x multiome",
129            "status": "preview",
130            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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139            "lab": {
140                "title": "Ryan Corces, Gladstone Institute UCSF"
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143            "status": "preview",
144            "summary": "single-nucleus ATAC-seq (10x multiome)"
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153            "lab": {
154                "title": "Ryan Corces, Gladstone Institute UCSF"
155            },
156            "preferred_assay_title": "10x multiome",
157            "status": "preview",
158            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
159        },
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167            "lab": {
168                "title": "Ryan Corces, Gladstone Institute UCSF"
169            },
170            "preferred_assay_title": "10x multiome",
171            "status": "preview",
172            "summary": "single-nucleus ATAC-seq (10x multiome)"
173        },
174        {
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176            "accession": "IGVFDS9460DSVF",
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178                "igvf:corces_measurementSet_X040_G4_RNA"
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181            "lab": {
182                "title": "Ryan Corces, Gladstone Institute UCSF"
183            },
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186            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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196                "title": "Ryan Corces, Gladstone Institute UCSF"
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200            "summary": "single-nucleus ATAC-seq (10x multiome)"
201        },
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210                "title": "Ryan Corces, Gladstone Institute UCSF"
211            },
212            "preferred_assay_title": "10x multiome",
213            "status": "preview",
214            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
215        },
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223            "lab": {
224                "title": "Ryan Corces, Gladstone Institute UCSF"
225            },
226            "preferred_assay_title": "10x multiome",
227            "status": "preview",
228            "summary": "single-nucleus ATAC-seq (10x multiome)"
229        },
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237            "lab": {
238                "title": "Ryan Corces, Gladstone Institute UCSF"
239            },
240            "preferred_assay_title": "10x multiome",
241            "status": "preview",
242            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
243        },
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251            "lab": {
252                "title": "Ryan Corces, Gladstone Institute UCSF"
253            },
254            "preferred_assay_title": "10x multiome",
255            "status": "preview",
256            "summary": "single-nucleus ATAC-seq (10x multiome)"
257        },
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265            "lab": {
266                "title": "Ryan Corces, Gladstone Institute UCSF"
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270            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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294                "title": "Ryan Corces, Gladstone Institute UCSF"
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298            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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308                "title": "Ryan Corces, Gladstone Institute UCSF"
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312            "summary": "single-nucleus ATAC-seq (10x multiome)"
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322                "title": "Ryan Corces, Gladstone Institute UCSF"
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324            "preferred_assay_title": "10x multiome",
325            "status": "preview",
326            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
327        },
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335            "lab": {
336                "title": "Ryan Corces, Gladstone Institute UCSF"
337            },
338            "preferred_assay_title": "10x multiome",
339            "status": "preview",
340            "summary": "single-nucleus ATAC-seq (10x multiome)"
341        },
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350                "title": "Ryan Corces, Gladstone Institute UCSF"
351            },
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353            "status": "preview",
354            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
355        },
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363            "lab": {
364                "title": "Ryan Corces, Gladstone Institute UCSF"
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367            "status": "preview",
368            "summary": "single-nucleus ATAC-seq (10x multiome)"
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377            "lab": {
378                "title": "Ryan Corces, Gladstone Institute UCSF"
379            },
380            "preferred_assay_title": "10x multiome",
381            "status": "preview",
382            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
383        }
384    ],
385    "institutional_certificates": [
386        {
387            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
388            "certificate_identifier": "IP115-05",
389            "controlled_access": false,
390            "data_use_limitation_summary": "No limitations",
391            "status": "in progress"
392        }
393    ],
394    "lab": {
395        "@id": "/labs/ryan-corces/",
396        "title": "Ryan Corces, Gladstone Institute UCSF"
397    },
398    "lower_bound_age": 53,
399    "lower_bound_age_in_hours": 464280,
400    "multiplexed_in": [
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414            "status": "preview"
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419            "status": "preview"
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424            "status": "preview"
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429            "status": "preview"
430        },
431        {
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433            "accession": "IGVFSM6104DPZN",
434            "status": "preview"
435        },
436        {
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438            "accession": "IGVFSM7690RNGC",
439            "status": "preview"
440        },
441        {
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443            "accession": "IGVFSM0903NROD",
444            "status": "preview"
445        },
446        {
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448            "accession": "IGVFSM0218TRNG",
449            "status": "preview"
450        },
451        {
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453            "accession": "IGVFSM1969WJDB",
454            "status": "preview"
455        },
456        {
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458            "accession": "IGVFSM3324TBYQ",
459            "status": "preview"
460        }
461    ],
462    "origin_of": [],
463    "parts": [],
464    "pmi": 220,
465    "pmi_units": "minute",
466    "pooled_in": [],
467    "preservation_method": "flash-freezing",
468    "protocols": [
469        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
470    ],
471    "sample_terms": [
472        {
473            "@id": "/sample-terms/UBERON_0002740/",
474            "status": "preview",
475            "term_name": "posterior cingulate gyrus"
476        }
477    ],
478    "schema_version": "21",
479    "sex": "male",
480    "sorted_fractions": [],
481    "sources": [
482        {
483            "@id": "/sources/banner-health/",
484            "status": "released",
485            "title": "Banner Health"
486        }
487    ],
488    "status": "preview",
489    "submitted_by": {
490        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
491        "title": "Ryan Corces"
492    },
493    "summary": "Homo sapiens (male, 53 years) posterior cingulate gyrus tissue",
494    "taxa": "Homo sapiens",
495    "upper_bound_age": 53,
496    "upper_bound_age_in_hours": 464280,
497    "uuid": "2660747c-a118-46d2-a2b9-b85f1761479b",
498    "virtual": false
499}