posterior cingulate gyrus — IGVFSM3460UGCL

preview
1{
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5        "Tissue",
6        "Biosample",
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12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1352_CING"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM3460UGCL](/tissues/IGVFSM3460UGCL/) has in progress subobject phenotype term [DOID_0080832](/phenotype-terms/DOID_0080832/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM3460UGCL/"
25            },
26            {
27                "category": "mismatched status",
28                "detail": "Preview tissue [IGVFSM3460UGCL](/tissues/IGVFSM3460UGCL/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_item_status",
32                "path": "/tissues/IGVFSM3460UGCL/"
33            },
34            {
35                "category": "mismatched status",
36                "detail": "Preview tissue [IGVFSM3460UGCL](/tissues/IGVFSM3460UGCL/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
37                "level": 30,
38                "level_name": "INTERNAL_ACTION",
39                "name": "audit_item_status",
40                "path": "/tissues/IGVFSM3460UGCL/"
41            },
42            {
43                "category": "missing CCF ID",
44                "detail": "Tissue [IGVFSM3460UGCL](/tissues/IGVFSM3460UGCL/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
45                "level": 30,
46                "level_name": "INTERNAL_ACTION",
47                "name": "audit_tissue_ccf_id",
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49            }
50        ]
51    },
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55    },
56    "classifications": [
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58    ],
59    "creation_timestamp": "2025-03-19T04:14:22.740487+00:00",
60    "date_obtained": "2023-03-07",
61    "disease_terms": [
62        {
63            "@id": "/phenotype-terms/DOID_14330/",
64            "status": "in progress",
65            "term_name": "Parkinson's disease"
66        },
67        {
68            "@id": "/phenotype-terms/DOID_9246/",
69            "status": "in progress",
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71        },
72        {
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74            "status": "in progress",
75            "term_name": "mild cognitive impairment"
76        }
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617            "preferred_assay_title": "10x multiome",
618            "status": "preview",
619            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
620        },
621        {
622            "@id": "/measurement-sets/IGVFDS1260SOEX/",
623            "accession": "IGVFDS1260SOEX",
624            "aliases": [
625                "igvf:corces_measurementSet_RP029_G6_ATAC"
626            ],
627            "file_set_type": "experimental data",
628            "lab": {
629                "title": "Ryan Corces, Gladstone Institute UCSF"
630            },
631            "preferred_assay_title": "10x multiome",
632            "status": "preview",
633            "summary": "single-nucleus ATAC-seq (10x multiome)"
634        },
635        {
636            "@id": "/measurement-sets/IGVFDS3236ZDII/",
637            "accession": "IGVFDS3236ZDII",
638            "aliases": [
639                "igvf:corces_measurementSet_RP029_G6_RNA"
640            ],
641            "file_set_type": "experimental data",
642            "lab": {
643                "title": "Ryan Corces, Gladstone Institute UCSF"
644            },
645            "preferred_assay_title": "10x multiome",
646            "status": "preview",
647            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
648        },
649        {
650            "@id": "/measurement-sets/IGVFDS9401BHSV/",
651            "accession": "IGVFDS9401BHSV",
652            "aliases": [
653                "igvf:corces_measurementSet_RP029_G1_ATAC"
654            ],
655            "file_set_type": "experimental data",
656            "lab": {
657                "title": "Ryan Corces, Gladstone Institute UCSF"
658            },
659            "preferred_assay_title": "10x multiome",
660            "status": "preview",
661            "summary": "single-nucleus ATAC-seq (10x multiome)"
662        },
663        {
664            "@id": "/measurement-sets/IGVFDS2795ZOEL/",
665            "accession": "IGVFDS2795ZOEL",
666            "aliases": [
667                "igvf:corces_measurementSet_RP029_G1_RNA"
668            ],
669            "file_set_type": "experimental data",
670            "lab": {
671                "title": "Ryan Corces, Gladstone Institute UCSF"
672            },
673            "preferred_assay_title": "10x multiome",
674            "status": "preview",
675            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
676        },
677        {
678            "@id": "/measurement-sets/IGVFDS1932PIPJ/",
679            "accession": "IGVFDS1932PIPJ",
680            "aliases": [
681                "igvf:corces_measurementSet_RP029_G3_RNA"
682            ],
683            "file_set_type": "experimental data",
684            "lab": {
685                "title": "Ryan Corces, Gladstone Institute UCSF"
686            },
687            "preferred_assay_title": "10x multiome",
688            "status": "preview",
689            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
690        },
691        {
692            "@id": "/measurement-sets/IGVFDS1915WBYK/",
693            "accession": "IGVFDS1915WBYK",
694            "aliases": [
695                "igvf:corces_measurementSet_RP029_G3_ATAC"
696            ],
697            "file_set_type": "experimental data",
698            "lab": {
699                "title": "Ryan Corces, Gladstone Institute UCSF"
700            },
701            "preferred_assay_title": "10x multiome",
702            "status": "preview",
703            "summary": "single-nucleus ATAC-seq (10x multiome)"
704        },
705        {
706            "@id": "/measurement-sets/IGVFDS3073YLAB/",
707            "accession": "IGVFDS3073YLAB",
708            "aliases": [
709                "igvf:corces_measurementSet_RP029_G7_ATAC"
710            ],
711            "file_set_type": "experimental data",
712            "lab": {
713                "title": "Ryan Corces, Gladstone Institute UCSF"
714            },
715            "preferred_assay_title": "10x multiome",
716            "status": "preview",
717            "summary": "single-nucleus ATAC-seq (10x multiome)"
718        },
719        {
720            "@id": "/measurement-sets/IGVFDS2273GPNU/",
721            "accession": "IGVFDS2273GPNU",
722            "aliases": [
723                "igvf:corces_measurementSet_RP029_G7_RNA"
724            ],
725            "file_set_type": "experimental data",
726            "lab": {
727                "title": "Ryan Corces, Gladstone Institute UCSF"
728            },
729            "preferred_assay_title": "10x multiome",
730            "status": "preview",
731            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
732        },
733        {
734            "@id": "/measurement-sets/IGVFDS0688NEEC/",
735            "accession": "IGVFDS0688NEEC",
736            "aliases": [
737                "igvf:corces_measurementSet_RP029_G8_ATAC"
738            ],
739            "file_set_type": "experimental data",
740            "lab": {
741                "title": "Ryan Corces, Gladstone Institute UCSF"
742            },
743            "preferred_assay_title": "10x multiome",
744            "status": "preview",
745            "summary": "single-nucleus ATAC-seq (10x multiome)"
746        },
747        {
748            "@id": "/measurement-sets/IGVFDS4046FPTG/",
749            "accession": "IGVFDS4046FPTG",
750            "aliases": [
751                "igvf:corces_measurementSet_RP029_G8_RNA"
752            ],
753            "file_set_type": "experimental data",
754            "lab": {
755                "title": "Ryan Corces, Gladstone Institute UCSF"
756            },
757            "preferred_assay_title": "10x multiome",
758            "status": "preview",
759            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
760        }
761    ],
762    "institutional_certificates": [
763        {
764            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
765            "certificate_identifier": "IP115-05",
766            "controlled_access": false,
767            "status": "in progress"
768        }
769    ],
770    "lab": {
771        "@id": "/labs/ryan-corces/",
772        "title": "Ryan Corces, Gladstone Institute UCSF"
773    },
774    "lower_bound_age": 80,
775    "lower_bound_age_in_hours": 700800,
776    "multiplexed_in": [
777        {
778            "@id": "/multiplexed-samples/IGVFSM4462GKQC/",
779            "accession": "IGVFSM4462GKQC",
780            "status": "preview"
781        },
782        {
783            "@id": "/multiplexed-samples/IGVFSM1990PUGQ/",
784            "accession": "IGVFSM1990PUGQ",
785            "status": "preview"
786        },
787        {
788            "@id": "/multiplexed-samples/IGVFSM5674WWIP/",
789            "accession": "IGVFSM5674WWIP",
790            "status": "preview"
791        },
792        {
793            "@id": "/multiplexed-samples/IGVFSM0728SZZR/",
794            "accession": "IGVFSM0728SZZR",
795            "status": "preview"
796        },
797        {
798            "@id": "/multiplexed-samples/IGVFSM6363AZVN/",
799            "accession": "IGVFSM6363AZVN",
800            "status": "preview"
801        },
802        {
803            "@id": "/multiplexed-samples/IGVFSM8345ETIT/",
804            "accession": "IGVFSM8345ETIT",
805            "status": "preview"
806        },
807        {
808            "@id": "/multiplexed-samples/IGVFSM0027DAWZ/",
809            "accession": "IGVFSM0027DAWZ",
810            "status": "preview"
811        },
812        {
813            "@id": "/multiplexed-samples/IGVFSM3938LXBP/",
814            "accession": "IGVFSM3938LXBP",
815            "status": "preview"
816        },
817        {
818            "@id": "/multiplexed-samples/IGVFSM8863JLWX/",
819            "accession": "IGVFSM8863JLWX",
820            "status": "preview"
821        },
822        {
823            "@id": "/multiplexed-samples/IGVFSM3192MEUT/",
824            "accession": "IGVFSM3192MEUT",
825            "status": "preview"
826        },
827        {
828            "@id": "/multiplexed-samples/IGVFSM4901QTFI/",
829            "accession": "IGVFSM4901QTFI",
830            "status": "preview"
831        },
832        {
833            "@id": "/multiplexed-samples/IGVFSM7335HESV/",
834            "accession": "IGVFSM7335HESV",
835            "status": "preview"
836        },
837        {
838            "@id": "/multiplexed-samples/IGVFSM7659CCOT/",
839            "accession": "IGVFSM7659CCOT",
840            "status": "preview"
841        },
842        {
843            "@id": "/multiplexed-samples/IGVFSM8048XYHR/",
844            "accession": "IGVFSM8048XYHR",
845            "status": "preview"
846        },
847        {
848            "@id": "/multiplexed-samples/IGVFSM5142KRLD/",
849            "accession": "IGVFSM5142KRLD",
850            "status": "preview"
851        },
852        {
853            "@id": "/multiplexed-samples/IGVFSM0496VQZI/",
854            "accession": "IGVFSM0496VQZI",
855            "status": "preview"
856        },
857        {
858            "@id": "/multiplexed-samples/IGVFSM8298LTTJ/",
859            "accession": "IGVFSM8298LTTJ",
860            "status": "preview"
861        },
862        {
863            "@id": "/multiplexed-samples/IGVFSM9093UXXC/",
864            "accession": "IGVFSM9093UXXC",
865            "status": "preview"
866        },
867        {
868            "@id": "/multiplexed-samples/IGVFSM2738AFKG/",
869            "accession": "IGVFSM2738AFKG",
870            "status": "preview"
871        },
872        {
873            "@id": "/multiplexed-samples/IGVFSM1252DLAM/",
874            "accession": "IGVFSM1252DLAM",
875            "status": "preview"
876        },
877        {
878            "@id": "/multiplexed-samples/IGVFSM5907AKIS/",
879            "accession": "IGVFSM5907AKIS",
880            "status": "preview"
881        },
882        {
883            "@id": "/multiplexed-samples/IGVFSM0019MOAR/",
884            "accession": "IGVFSM0019MOAR",
885            "status": "preview"
886        },
887        {
888            "@id": "/multiplexed-samples/IGVFSM3839YDOW/",
889            "accession": "IGVFSM3839YDOW",
890            "status": "preview"
891        },
892        {
893            "@id": "/multiplexed-samples/IGVFSM9143IXZW/",
894            "accession": "IGVFSM9143IXZW",
895            "status": "preview"
896        }
897    ],
898    "origin_of": [],
899    "parts": [],
900    "pmi": 208,
901    "pmi_units": "minute",
902    "pooled_in": [],
903    "preservation_method": "flash-freezing",
904    "protocols": [
905        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
906    ],
907    "sample_terms": [
908        {
909            "@id": "/sample-terms/UBERON_0002740/",
910            "status": "preview",
911            "term_name": "posterior cingulate gyrus"
912        }
913    ],
914    "schema_version": "21",
915    "sex": "female",
916    "sorted_fractions": [],
917    "sources": [
918        {
919            "@id": "/sources/banner-health/",
920            "status": "released",
921            "title": "Banner Health"
922        }
923    ],
924    "status": "preview",
925    "submitted_by": {
926        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
927        "title": "Ryan Corces"
928    },
929    "summary": "Homo sapiens (female, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment",
930    "taxa": "Homo sapiens",
931    "upper_bound_age": 80,
932    "upper_bound_age_in_hours": 700800,
933    "uuid": "6c7eb2d1-525e-4ad6-9b1f-6f230809169e",
934    "virtual": false
935}