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substantia nigra — IGVFSM3434FJOI

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This object is in preview status. Metadata is subject to change until this object is released.
Summary
Homo sapiens (male, 81 years) substantia nigra tissue
Sample Terms
Sex
male
Age
81 years
Post-mortem Interval
275 minutes
Preservation Method
flash-freezing
Taxa
Homo sapiens
Sources
banner-health
Date Harvested
November 1, 2022
Aliases
igvf:corces_tissue_BANN2057_SN
Protocols

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:corces_donor_BANN2057
male
Homo sapiens

File Sets

32 items
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_X012_G4_ATAC
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_X012_G4_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_X012_G3_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_X012_G2_ATAC
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_X012_G6_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP009_G7_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_X012_G5_ATAC
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP009_G8_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP009_G4_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_X012_G6_ATAC
Ryan Corces, Gladstone Institute UCSF

Multiplexed In Samples

16 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 74 years) putamen tissue; Homo sapiens (male, 72 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (male, 74 years) putamen tissue; Homo sapiens (male, 72 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (male, 74 years) putamen tissue; Homo sapiens (male, 72 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (male, 74 years) putamen tissue; Homo sapiens (male, 72 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF