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putamen — IGVFSM3338SXPN
putamen — IGVFSM3338SXPN
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Summary
Homo sapiens (female, 80 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment
Sample Terms
putamen
Sex
female
Age
80 years
Post-mortem Interval
208 minutes
Preservation Method
flash-freezing
Taxa
Homo sapiens
Sources
banner-health
Date Harvested
February 1, 2023
Aliases
igvf:corces_tissue_BANN1352_PUT
Protocols
https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO9211DWXZ
igvf:corces_donor_BANN1352
female
Homo sapiens
File Sets
48 items
1
2
3
4
5
Accession
Summary
Aliases
Lab
IGVFDS0346MQLV
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X032_G2_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS0577OKVB
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP026_G1_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS0821GFDR
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP026_G1_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS1225ARBV
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP005_G5_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS1905QFFH
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP026_G6_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS1909GMRJ
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP005_G1_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS2028XESA
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP005_G5_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS2132XMHB
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_X032_G4_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS2336BWET
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_X032_G8_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS2479YVKW
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP026_G7_ATAC
Ryan Corces, Gladstone Institute UCSF
Multiplexed In Samples
24 items
1
2
3
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM0891NGTB
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
IGVFSM0921NWYJ
MultiplexedSample
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples
IGVFSM1367EGUO
MultiplexedSample
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples
IGVFSM1655YUWG
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
IGVFSM2646IJIB
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
IGVFSM2979ZZFZ
MultiplexedSample
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples
IGVFSM3046HYHX
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
IGVFSM3222RGNB
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
IGVFSM5214FLGB
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
IGVFSM5241MOXO
MultiplexedSample
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF