{
"@context": "/terms/",
"@id": "/tissues/IGVFSM3314YMDF/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3314YMDF",
"age": "79",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN9926_MTG"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM3314YMDF](/tissues/IGVFSM3314YMDF/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM3314YMDF/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM3314YMDF](/tissues/IGVFSM3314YMDF/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM3314YMDF/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T04:08:03.195959+00:00",
"date_obtained": "2022-10-04",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO5718REZU/",
"accession": "IGVFDO5718REZU",
"ethnicities": [
"European"
],
"status": "preview"
}
],
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{
"@id": "/measurement-sets/IGVFDS3200KMON/",
"accession": "IGVFDS3200KMON",
"aliases": [
"igvf:corces_measurementSet_X005_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5901XMYG/",
"accession": "IGVFDS5901XMYG",
"aliases": [
"igvf:corces_measurementSet_X005_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8054AHNJ/",
"accession": "IGVFDS8054AHNJ",
"aliases": [
"igvf:corces_measurementSet_X005_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8119MEID/",
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"aliases": [
"igvf:corces_measurementSet_X005_G2_RNA"
],
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"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6220HECG/",
"accession": "IGVFDS6220HECG",
"aliases": [
"igvf:corces_measurementSet_X005_G6_ATAC"
],
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"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2328NLDU/",
"accession": "IGVFDS2328NLDU",
"aliases": [
"igvf:corces_measurementSet_X005_G6_RNA"
],
"file_set_type": "experimental data",
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"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3572LAIM/",
"accession": "IGVFDS3572LAIM",
"aliases": [
"igvf:corces_measurementSet_X005_G1_ATAC"
],
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"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2253HXOS/",
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"aliases": [
"igvf:corces_measurementSet_X005_G1_RNA"
],
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"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9627VAJD/",
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"igvf:corces_measurementSet_X005_G3_ATAC"
],
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"title": "Ryan Corces, Gladstone Institute UCSF"
},
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},
{
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],
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},
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"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1493FGGS/",
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"aliases": [
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],
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"title": "Ryan Corces, Gladstone Institute UCSF"
},
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},
{
"@id": "/measurement-sets/IGVFDS8965MWPW/",
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],
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},
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},
{
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"igvf:corces_measurementSet_X005_G4_ATAC"
],
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},
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},
{
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],
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},
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"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1448UYDZ/",
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"igvf:corces_measurementSet_X005_G7_ATAC"
],
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},
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"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7244FXKA/",
"accession": "IGVFDS7244FXKA",
"aliases": [
"igvf:corces_measurementSet_X005_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8397RKBP/",
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"aliases": [
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],
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"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
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},
{
"@id": "/measurement-sets/IGVFDS3792WNJK/",
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],
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
{
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},
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"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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}
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}
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"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"schema_version": "21",
"sex": "female",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease",
"taxa": "Homo sapiens",
"upper_bound_age": 79,
"upper_bound_age_in_hours": 692040,
"uuid": "fbb2aba2-8474-46ca-b15a-6ac8ae247844",
"virtual": false
}