middle temporal gyrus — IGVFSM3182MLKS

preview
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM3182MLKS/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM3182MLKS",
11    "age": "72",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN0560_MTG"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM3182MLKS](/tissues/IGVFSM3182MLKS/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM3182MLKS/"
25            },
26            {
27                "category": "missing CCF ID",
28                "detail": "Tissue [IGVFSM3182MLKS](/tissues/IGVFSM3182MLKS/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_tissue_ccf_id",
32                "path": "/tissues/IGVFSM3182MLKS/"
33            }
34        ]
35    },
36    "award": {
37        "@id": "/awards/HG012076/",
38        "component": "mapping"
39    },
40    "classifications": [
41        "tissue"
42    ],
43    "creation_timestamp": "2025-03-19T04:11:11.453957+00:00",
44    "date_obtained": "2022-12-14",
45    "disease_terms": [
46        {
47            "@id": "/phenotype-terms/DOID_14330/",
48            "status": "in progress",
49            "term_name": "Parkinson's disease"
50        }
51    ],
52    "donors": [
53        {
54            "@id": "/human-donors/IGVFDO0773NPOH/",
55            "accession": "IGVFDO0773NPOH",
56            "ethnicities": [
57                "European"
58            ],
59            "status": "preview"
60        }
61    ],
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66            "aliases": [
67                "igvf:corces_measurementSet_X025_G2_ATAC"
68            ],
69            "file_set_type": "experimental data",
70            "lab": {
71                "title": "Ryan Corces, Gladstone Institute UCSF"
72            },
73            "preferred_assay_title": "10x multiome",
74            "status": "preview",
75            "summary": "single-nucleus ATAC-seq (10x multiome)"
76        },
77        {
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79            "accession": "IGVFDS8616NAOI",
80            "aliases": [
81                "igvf:corces_measurementSet_X025_G2_RNA"
82            ],
83            "file_set_type": "experimental data",
84            "lab": {
85                "title": "Ryan Corces, Gladstone Institute UCSF"
86            },
87            "preferred_assay_title": "10x multiome",
88            "status": "preview",
89            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
90        },
91        {
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93            "accession": "IGVFDS0326OLER",
94            "aliases": [
95                "igvf:corces_measurementSet_X025_G4_ATAC"
96            ],
97            "file_set_type": "experimental data",
98            "lab": {
99                "title": "Ryan Corces, Gladstone Institute UCSF"
100            },
101            "preferred_assay_title": "10x multiome",
102            "status": "preview",
103            "summary": "single-nucleus ATAC-seq (10x multiome)"
104        },
105        {
106            "@id": "/measurement-sets/IGVFDS5286SAVD/",
107            "accession": "IGVFDS5286SAVD",
108            "aliases": [
109                "igvf:corces_measurementSet_X025_G4_RNA"
110            ],
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112            "lab": {
113                "title": "Ryan Corces, Gladstone Institute UCSF"
114            },
115            "preferred_assay_title": "10x multiome",
116            "status": "preview",
117            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
118        },
119        {
120            "@id": "/measurement-sets/IGVFDS0241TXPM/",
121            "accession": "IGVFDS0241TXPM",
122            "aliases": [
123                "igvf:corces_measurementSet_X025_G7_RNA"
124            ],
125            "file_set_type": "experimental data",
126            "lab": {
127                "title": "Ryan Corces, Gladstone Institute UCSF"
128            },
129            "preferred_assay_title": "10x multiome",
130            "status": "preview",
131            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
132        },
133        {
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135            "accession": "IGVFDS5478XCHL",
136            "aliases": [
137                "igvf:corces_measurementSet_X025_G7_ATAC"
138            ],
139            "file_set_type": "experimental data",
140            "lab": {
141                "title": "Ryan Corces, Gladstone Institute UCSF"
142            },
143            "preferred_assay_title": "10x multiome",
144            "status": "preview",
145            "summary": "single-nucleus ATAC-seq (10x multiome)"
146        },
147        {
148            "@id": "/measurement-sets/IGVFDS7226QHGC/",
149            "accession": "IGVFDS7226QHGC",
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151                "igvf:corces_measurementSet_X025_G6_ATAC"
152            ],
153            "file_set_type": "experimental data",
154            "lab": {
155                "title": "Ryan Corces, Gladstone Institute UCSF"
156            },
157            "preferred_assay_title": "10x multiome",
158            "status": "preview",
159            "summary": "single-nucleus ATAC-seq (10x multiome)"
160        },
161        {
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163            "accession": "IGVFDS9683XLIM",
164            "aliases": [
165                "igvf:corces_measurementSet_X025_G6_RNA"
166            ],
167            "file_set_type": "experimental data",
168            "lab": {
169                "title": "Ryan Corces, Gladstone Institute UCSF"
170            },
171            "preferred_assay_title": "10x multiome",
172            "status": "preview",
173            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
174        },
175        {
176            "@id": "/measurement-sets/IGVFDS8438UHSY/",
177            "accession": "IGVFDS8438UHSY",
178            "aliases": [
179                "igvf:corces_measurementSet_X025_G3_ATAC"
180            ],
181            "file_set_type": "experimental data",
182            "lab": {
183                "title": "Ryan Corces, Gladstone Institute UCSF"
184            },
185            "preferred_assay_title": "10x multiome",
186            "status": "preview",
187            "summary": "single-nucleus ATAC-seq (10x multiome)"
188        },
189        {
190            "@id": "/measurement-sets/IGVFDS3087IDPH/",
191            "accession": "IGVFDS3087IDPH",
192            "aliases": [
193                "igvf:corces_measurementSet_X025_G3_RNA"
194            ],
195            "file_set_type": "experimental data",
196            "lab": {
197                "title": "Ryan Corces, Gladstone Institute UCSF"
198            },
199            "preferred_assay_title": "10x multiome",
200            "status": "preview",
201            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
202        },
203        {
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207                "igvf:corces_measurementSet_X025_G1_ATAC"
208            ],
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210            "lab": {
211                "title": "Ryan Corces, Gladstone Institute UCSF"
212            },
213            "preferred_assay_title": "10x multiome",
214            "status": "preview",
215            "summary": "single-nucleus ATAC-seq (10x multiome)"
216        },
217        {
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221                "igvf:corces_measurementSet_X025_G1_RNA"
222            ],
223            "file_set_type": "experimental data",
224            "lab": {
225                "title": "Ryan Corces, Gladstone Institute UCSF"
226            },
227            "preferred_assay_title": "10x multiome",
228            "status": "preview",
229            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
230        },
231        {
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233            "accession": "IGVFDS2414ATDI",
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235                "igvf:corces_measurementSet_X025_G5_ATAC"
236            ],
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238            "lab": {
239                "title": "Ryan Corces, Gladstone Institute UCSF"
240            },
241            "preferred_assay_title": "10x multiome",
242            "status": "preview",
243            "summary": "single-nucleus ATAC-seq (10x multiome)"
244        },
245        {
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249                "igvf:corces_measurementSet_X025_G5_RNA"
250            ],
251            "file_set_type": "experimental data",
252            "lab": {
253                "title": "Ryan Corces, Gladstone Institute UCSF"
254            },
255            "preferred_assay_title": "10x multiome",
256            "status": "preview",
257            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
258        },
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261            "accession": "IGVFDS5362QJCF",
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263                "igvf:corces_measurementSet_RP011_G3_ATAC"
264            ],
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266            "lab": {
267                "title": "Ryan Corces, Gladstone Institute UCSF"
268            },
269            "preferred_assay_title": "10x multiome",
270            "status": "preview",
271            "summary": "single-nucleus ATAC-seq (10x multiome)"
272        },
273        {
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276            "aliases": [
277                "igvf:corces_measurementSet_RP011_G3_RNA"
278            ],
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280            "lab": {
281                "title": "Ryan Corces, Gladstone Institute UCSF"
282            },
283            "preferred_assay_title": "10x multiome",
284            "status": "preview",
285            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
286        },
287        {
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291                "igvf:corces_measurementSet_RP011_G6_ATAC"
292            ],
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294            "lab": {
295                "title": "Ryan Corces, Gladstone Institute UCSF"
296            },
297            "preferred_assay_title": "10x multiome",
298            "status": "preview",
299            "summary": "single-nucleus ATAC-seq (10x multiome)"
300        },
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304            "aliases": [
305                "igvf:corces_measurementSet_RP011_G6_RNA"
306            ],
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308            "lab": {
309                "title": "Ryan Corces, Gladstone Institute UCSF"
310            },
311            "preferred_assay_title": "10x multiome",
312            "status": "preview",
313            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
314        },
315        {
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317            "accession": "IGVFDS3484DNVB",
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319                "igvf:corces_measurementSet_RP011_G5_RNA"
320            ],
321            "file_set_type": "experimental data",
322            "lab": {
323                "title": "Ryan Corces, Gladstone Institute UCSF"
324            },
325            "preferred_assay_title": "10x multiome",
326            "status": "preview",
327            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
328        },
329        {
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333                "igvf:corces_measurementSet_RP011_G5_ATAC"
334            ],
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336            "lab": {
337                "title": "Ryan Corces, Gladstone Institute UCSF"
338            },
339            "preferred_assay_title": "10x multiome",
340            "status": "preview",
341            "summary": "single-nucleus ATAC-seq (10x multiome)"
342        },
343        {
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345            "accession": "IGVFDS5146PTIC",
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347                "igvf:corces_measurementSet_RP011_G7_ATAC"
348            ],
349            "file_set_type": "experimental data",
350            "lab": {
351                "title": "Ryan Corces, Gladstone Institute UCSF"
352            },
353            "preferred_assay_title": "10x multiome",
354            "status": "preview",
355            "summary": "single-nucleus ATAC-seq (10x multiome)"
356        },
357        {
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359            "accession": "IGVFDS2300TLPU",
360            "aliases": [
361                "igvf:corces_measurementSet_RP011_G7_RNA"
362            ],
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364            "lab": {
365                "title": "Ryan Corces, Gladstone Institute UCSF"
366            },
367            "preferred_assay_title": "10x multiome",
368            "status": "preview",
369            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
370        },
371        {
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373            "accession": "IGVFDS2229EHIM",
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375                "igvf:corces_measurementSet_RP011_G1_ATAC"
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378            "lab": {
379                "title": "Ryan Corces, Gladstone Institute UCSF"
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382            "status": "preview",
383            "summary": "single-nucleus ATAC-seq (10x multiome)"
384        },
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393                "title": "Ryan Corces, Gladstone Institute UCSF"
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407                "title": "Ryan Corces, Gladstone Institute UCSF"
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411            "summary": "single-nucleus ATAC-seq (10x multiome)"
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421                "title": "Ryan Corces, Gladstone Institute UCSF"
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434            "lab": {
435                "title": "Ryan Corces, Gladstone Institute UCSF"
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438            "status": "preview",
439            "summary": "single-nucleus ATAC-seq (10x multiome)"
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449                "title": "Ryan Corces, Gladstone Institute UCSF"
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452            "status": "preview",
453            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
454        },
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462            "lab": {
463                "title": "Ryan Corces, Gladstone Institute UCSF"
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466            "status": "preview",
467            "summary": "single-nucleus ATAC-seq (10x multiome)"
468        },
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475            "file_set_type": "experimental data",
476            "lab": {
477                "title": "Ryan Corces, Gladstone Institute UCSF"
478            },
479            "preferred_assay_title": "10x multiome",
480            "status": "preview",
481            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
482        }
483    ],
484    "institutional_certificates": [
485        {
486            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
487            "certificate_identifier": "IP115-05",
488            "controlled_access": false,
489            "data_use_limitation_summary": "No limitations",
490            "status": "in progress"
491        }
492    ],
493    "lab": {
494        "@id": "/labs/ryan-corces/",
495        "title": "Ryan Corces, Gladstone Institute UCSF"
496    },
497    "lower_bound_age": 72,
498    "lower_bound_age_in_hours": 630720,
499    "multiplexed_in": [
500        {
501            "@id": "/multiplexed-samples/IGVFSM2452FKKK/",
502            "accession": "IGVFSM2452FKKK",
503            "status": "preview"
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505        {
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510        {
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513            "status": "preview"
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534        },
535        {
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538            "status": "preview"
539        },
540        {
541            "@id": "/multiplexed-samples/IGVFSM0695RJYV/",
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543            "status": "preview"
544        },
545        {
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548            "status": "preview"
549        },
550        {
551            "@id": "/multiplexed-samples/IGVFSM0643EUKR/",
552            "accession": "IGVFSM0643EUKR",
553            "status": "preview"
554        },
555        {
556            "@id": "/multiplexed-samples/IGVFSM5471WRIH/",
557            "accession": "IGVFSM5471WRIH",
558            "status": "preview"
559        },
560        {
561            "@id": "/multiplexed-samples/IGVFSM4137SEKT/",
562            "accession": "IGVFSM4137SEKT",
563            "status": "preview"
564        },
565        {
566            "@id": "/multiplexed-samples/IGVFSM9332LJBD/",
567            "accession": "IGVFSM9332LJBD",
568            "status": "preview"
569        },
570        {
571            "@id": "/multiplexed-samples/IGVFSM9347ZBKI/",
572            "accession": "IGVFSM9347ZBKI",
573            "status": "preview"
574        },
575        {
576            "@id": "/multiplexed-samples/IGVFSM3747QRCH/",
577            "accession": "IGVFSM3747QRCH",
578            "status": "preview"
579        }
580    ],
581    "origin_of": [],
582    "parts": [],
583    "pmi": 210,
584    "pmi_units": "minute",
585    "pooled_in": [],
586    "preservation_method": "flash-freezing",
587    "protocols": [
588        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
589    ],
590    "sample_terms": [
591        {
592            "@id": "/sample-terms/UBERON_0002771/",
593            "status": "preview",
594            "term_name": "middle temporal gyrus"
595        }
596    ],
597    "schema_version": "21",
598    "sex": "male",
599    "sorted_fractions": [],
600    "sources": [
601        {
602            "@id": "/sources/banner-health/",
603            "status": "released",
604            "title": "Banner Health"
605        }
606    ],
607    "status": "preview",
608    "submitted_by": {
609        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
610        "title": "Ryan Corces"
611    },
612    "summary": "Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with Parkinson's disease",
613    "taxa": "Homo sapiens",
614    "upper_bound_age": 72,
615    "upper_bound_age_in_hours": 630720,
616    "uuid": "96c2eb82-65b8-4154-b61a-fafdea252fe9",
617    "virtual": false
618}