{
"@context": "/terms/",
"@id": "/tissues/IGVFSM3075UOAM/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3075UOAM",
"age": "78",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN1404_CING"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM3075UOAM](/tissues/IGVFSM3075UOAM/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM3075UOAM/"
},
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM3075UOAM](/tissues/IGVFSM3075UOAM/) has in progress subobject phenotype term [DOID_0080832](/phenotype-terms/DOID_0080832/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM3075UOAM/"
},
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM3075UOAM](/tissues/IGVFSM3075UOAM/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM3075UOAM/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM3075UOAM](/tissues/IGVFSM3075UOAM/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM3075UOAM/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T04:14:10.773188+00:00",
"date_obtained": "2023-02-22",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO2045AFUW/",
"accession": "IGVFDO2045AFUW",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS5733DNRB/",
"accession": "IGVFDS5733DNRB",
"aliases": [
"igvf:corces_measurementSet_X040_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8796ZGJG/",
"accession": "IGVFDS8796ZGJG",
"aliases": [
"igvf:corces_measurementSet_X040_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1992IYHH/",
"accession": "IGVFDS1992IYHH",
"aliases": [
"igvf:corces_measurementSet_X040_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8031ICKM/",
"accession": "IGVFDS8031ICKM",
"aliases": [
"igvf:corces_measurementSet_X040_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5414UFNC/",
"accession": "IGVFDS5414UFNC",
"aliases": [
"igvf:corces_measurementSet_X040_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2806EVXQ/",
"accession": "IGVFDS2806EVXQ",
"aliases": [
"igvf:corces_measurementSet_X040_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8948WYQH/",
"accession": "IGVFDS8948WYQH",
"aliases": [
"igvf:corces_measurementSet_X040_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1158PFBA/",
"accession": "IGVFDS1158PFBA",
"aliases": [
"igvf:corces_measurementSet_X040_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1310RPDD/",
"accession": "IGVFDS1310RPDD",
"aliases": [
"igvf:corces_measurementSet_X040_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9460DSVF/",
"accession": "IGVFDS9460DSVF",
"aliases": [
"igvf:corces_measurementSet_X040_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3830MHQW/",
"accession": "IGVFDS3830MHQW",
"aliases": [
"igvf:corces_measurementSet_X040_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4245QFMN/",
"accession": "IGVFDS4245QFMN",
"aliases": [
"igvf:corces_measurementSet_X040_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8899IUPN/",
"accession": "IGVFDS8899IUPN",
"aliases": [
"igvf:corces_measurementSet_X040_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4045ZVBI/",
"accession": "IGVFDS4045ZVBI",
"aliases": [
"igvf:corces_measurementSet_X040_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2033BVMC/",
"accession": "IGVFDS2033BVMC",
"aliases": [
"igvf:corces_measurementSet_X040_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7813FCIC/",
"accession": "IGVFDS7813FCIC",
"aliases": [
"igvf:corces_measurementSet_X040_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4482JTLK/",
"accession": "IGVFDS4482JTLK",
"aliases": [
"igvf:corces_measurementSet_RP021_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9248YEGX/",
"accession": "IGVFDS9248YEGX",
"aliases": [
"igvf:corces_measurementSet_RP021_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8030DHLN/",
"accession": "IGVFDS8030DHLN",
"aliases": [
"igvf:corces_measurementSet_RP021_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6017DONZ/",
"accession": "IGVFDS6017DONZ",
"aliases": [
"igvf:corces_measurementSet_RP021_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8445THOS/",
"accession": "IGVFDS8445THOS",
"aliases": [
"igvf:corces_measurementSet_RP021_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6950EWLX/",
"accession": "IGVFDS6950EWLX",
"aliases": [
"igvf:corces_measurementSet_RP021_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0829QLBI/",
"accession": "IGVFDS0829QLBI",
"aliases": [
"igvf:corces_measurementSet_RP021_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7453IBHQ/",
"accession": "IGVFDS7453IBHQ",
"aliases": [
"igvf:corces_measurementSet_RP021_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8175EHCI/",
"accession": "IGVFDS8175EHCI",
"aliases": [
"igvf:corces_measurementSet_RP021_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1245GYAG/",
"accession": "IGVFDS1245GYAG",
"aliases": [
"igvf:corces_measurementSet_RP021_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9871NUDC/",
"accession": "IGVFDS9871NUDC",
"aliases": [
"igvf:corces_measurementSet_RP021_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1354SHUU/",
"accession": "IGVFDS1354SHUU",
"aliases": [
"igvf:corces_measurementSet_RP021_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 78,
"lower_bound_age_in_hours": 683280,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM3718ZLPR/",
"accession": "IGVFSM3718ZLPR",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1109QIDV/",
"accession": "IGVFSM1109QIDV",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7243MOJZ/",
"accession": "IGVFSM7243MOJZ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7148SYPE/",
"accession": "IGVFSM7148SYPE",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1867DNXU/",
"accession": "IGVFSM1867DNXU",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9187MAHV/",
"accession": "IGVFSM9187MAHV",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6104DPZN/",
"accession": "IGVFSM6104DPZN",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7690RNGC/",
"accession": "IGVFSM7690RNGC",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2242CVZD/",
"accession": "IGVFSM2242CVZD",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3191ZJBV/",
"accession": "IGVFSM3191ZJBV",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6537ROKX/",
"accession": "IGVFSM6537ROKX",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8178OHJY/",
"accession": "IGVFSM8178OHJY",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0973MXCP/",
"accession": "IGVFSM0973MXCP",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0125OEIT/",
"accession": "IGVFSM0125OEIT",
"status": "preview"
}
],
"origin_of": [],
"parts": [],
"pmi": 222,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002740/",
"status": "preview",
"term_name": "posterior cingulate gyrus"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment",
"taxa": "Homo sapiens",
"upper_bound_age": 78,
"upper_bound_age_in_hours": 683280,
"uuid": "8df66e4c-af8a-48c7-80b9-eafb487aa370",
"virtual": false
}