{
"@context": "/terms/",
"@id": "/tissues/IGVFSM2973LYHI/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2973LYHI",
"age": "44",
"age_units": "year",
"aliases": [
"ansuman-satpathy:bridge_bone_marrow_donor1"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM2973LYHI](/tissues/IGVFSM2973LYHI/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM2973LYHI/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2024-07-23T20:36:57.409188+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO1264SGCS/",
"accession": "IGVFDO1264SGCS",
"ethnicities": [
"African American"
],
"status": "released"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS0584KNPT/",
"accession": "IGVFDS0584KNPT",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf12_10x5"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS8937ZULR/",
"accession": "IGVFDS8937ZULR",
"aliases": [
"ansuman-satpathy:multiseq_igvf12_10x5"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS7297BZEA/",
"accession": "IGVFDS7297BZEA",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf12_10x5"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS7016ZFVC/",
"accession": "IGVFDS7016ZFVC",
"aliases": [
"ansuman-satpathy:igvf12_analysis_set_10x5"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/measurement-sets/IGVFDS5862OZVJ/",
"accession": "IGVFDS5862OZVJ",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf12_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS8054AFXK/",
"accession": "IGVFDS8054AFXK",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf12_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS8701GVWQ/",
"accession": "IGVFDS8701GVWQ",
"aliases": [
"ansuman-satpathy:multiseq_igvf12_10x3"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS3005LSBM/",
"accession": "IGVFDS3005LSBM",
"aliases": [
"ansuman-satpathy:igvf12_analysis_set_10x3"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/measurement-sets/IGVFDS2361VFLK/",
"accession": "IGVFDS2361VFLK",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf12_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS5974ACGH/",
"accession": "IGVFDS5974ACGH",
"aliases": [
"ansuman-satpathy:multiseq_igvf12_10x4"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS5103JQSX/",
"accession": "IGVFDS5103JQSX",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf12_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS4731QGJR/",
"accession": "IGVFDS4731QGJR",
"aliases": [
"ansuman-satpathy:igvf12_analysis_set_10x4"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/measurement-sets/IGVFDS8924NQYH/",
"accession": "IGVFDS8924NQYH",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf12_10x7"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS0327AJZO/",
"accession": "IGVFDS0327AJZO",
"aliases": [
"ansuman-satpathy:multiseq_igvf12_10x7"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS9237NVSE/",
"accession": "IGVFDS9237NVSE",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf12_10x7"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS5437FJHN/",
"accession": "IGVFDS5437FJHN",
"aliases": [
"ansuman-satpathy:igvf12_analysis_set_10x7"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/measurement-sets/IGVFDS8103FALC/",
"accession": "IGVFDS8103FALC",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf12_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS7563XAXA/",
"accession": "IGVFDS7563XAXA",
"aliases": [
"ansuman-satpathy:multiseq_igvf12_10x1"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS1570UJMU/",
"accession": "IGVFDS1570UJMU",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf12_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS0793KZKS/",
"accession": "IGVFDS0793KZKS",
"aliases": [
"ansuman-satpathy:igvf12_analysis_set",
"ansuman-satpathy:igvf12_analysis_set_10x1"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/auxiliary-sets/IGVFDS2328ODXN/",
"accession": "IGVFDS2328ODXN",
"aliases": [
"ansuman-satpathy:multiseq_igvf12_10x2"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS1219HABJ/",
"accession": "IGVFDS1219HABJ",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf12_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS7359TFTN/",
"accession": "IGVFDS7359TFTN",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf12_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS4931IGGD/",
"accession": "IGVFDS4931IGGD",
"aliases": [
"ansuman-satpathy:igvf12_analysis_set_10x2"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/auxiliary-sets/IGVFDS5700OHED/",
"accession": "IGVFDS5700OHED",
"aliases": [
"ansuman-satpathy:multiseq_igvf12_10x6"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS7161RJGI/",
"accession": "IGVFDS7161RJGI",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf12_10x6"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS1581RZTR/",
"accession": "IGVFDS1581RZTR",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf12_10x6"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS6443DIXD/",
"accession": "IGVFDS6443DIXD",
"aliases": [
"ansuman-satpathy:igvf12_analysis_set_10x6"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/1e03eda3-a983-4cee-864e-43acb4c1b186/",
"certificate_identifier": "IP115-18",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"lower_bound_age": 44,
"lower_bound_age_in_hours": 385440,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM1640UGWP/",
"accession": "IGVFSM1640UGWP",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM7114MTSH/",
"accession": "IGVFSM7114MTSH",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM3762JDVU/",
"accession": "IGVFSM3762JDVU",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM6125HAMH/",
"accession": "IGVFSM6125HAMH",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM3641EGVH/",
"accession": "IGVFSM3641EGVH",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM5189FTFS/",
"accession": "IGVFSM5189FTFS",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM5574TAPU/",
"accession": "IGVFSM5574TAPU",
"status": "released"
}
],
"origin_of": [],
"parts": [],
"pooled_in": [],
"release_timestamp": "2025-03-22T00:38:29.265386+00:00",
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"status": "released",
"term_name": "bone marrow"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/bradley-bernstein/",
"status": "current",
"title": "Bradley Bernstein, Broad"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "Homo sapiens (male, 44 years) bone marrow tissue",
"taxa": "Homo sapiens",
"upper_bound_age": 44,
"upper_bound_age_in_hours": 385440,
"uuid": "68932375-d5c6-4237-85fd-498d899aba10",
"virtual": false
}