posterior cingulate gyrus — IGVFSM2625AHRC

1{
2    "@context": "/terms/",
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4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM2625AHRC",
11    "age": "75",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1349_CING_B1"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing CCF ID",
20                "detail": "Tissue [IGVFSM2625AHRC](/tissues/IGVFSM2625AHRC/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_tissue_ccf_id",
24                "path": "/tissues/IGVFSM2625AHRC/"
25            }
26        ]
27    },
28    "award": {
29        "@id": "/awards/HG012076/",
30        "component": "mapping"
31    },
32    "classifications": [
33        "tissue"
34    ],
35    "creation_timestamp": "2025-03-19T12:57:51.115001+00:00",
36    "date_obtained": "2022-12-05",
37    "donors": [
38        {
39            "@id": "/human-donors/IGVFDO7387JZDV/",
40            "accession": "IGVFDO7387JZDV",
41            "ethnicities": [
42                "European"
43            ],
44            "status": "preview"
45        }
46    ],
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52                "igvf:corces_measurementSet_X021_G3_ATAC"
53            ],
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55            "lab": {
56                "title": "Ryan Corces, Gladstone Institute UCSF"
57            },
58            "preferred_assay_title": "10x multiome",
59            "status": "preview",
60            "summary": "single-nucleus ATAC-seq (10x multiome)"
61        },
62        {
63            "@id": "/measurement-sets/IGVFDS1812YCLO/",
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66                "igvf:corces_measurementSet_X021_G3_RNA"
67            ],
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70                "title": "Ryan Corces, Gladstone Institute UCSF"
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73            "status": "preview",
74            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
75        },
76        {
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80                "igvf:corces_measurementSet_X021_G4_ATAC"
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84                "title": "Ryan Corces, Gladstone Institute UCSF"
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86            "preferred_assay_title": "10x multiome",
87            "status": "preview",
88            "summary": "single-nucleus ATAC-seq (10x multiome)"
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101            "status": "preview",
102            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
103        },
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112                "title": "Ryan Corces, Gladstone Institute UCSF"
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115            "status": "preview",
116            "summary": "single-nucleus ATAC-seq (10x multiome)"
117        },
118        {
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120            "accession": "IGVFDS1547LUKI",
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122                "igvf:corces_measurementSet_X021_G5_RNA"
123            ],
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125            "lab": {
126                "title": "Ryan Corces, Gladstone Institute UCSF"
127            },
128            "preferred_assay_title": "10x multiome",
129            "status": "preview",
130            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
131        },
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139            "lab": {
140                "title": "Ryan Corces, Gladstone Institute UCSF"
141            },
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143            "status": "preview",
144            "summary": "single-nucleus ATAC-seq (10x multiome)"
145        },
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153            "lab": {
154                "title": "Ryan Corces, Gladstone Institute UCSF"
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157            "status": "preview",
158            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
159        },
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165            ],
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167            "lab": {
168                "title": "Ryan Corces, Gladstone Institute UCSF"
169            },
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171            "status": "preview",
172            "summary": "single-nucleus ATAC-seq (10x multiome)"
173        },
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182                "title": "Ryan Corces, Gladstone Institute UCSF"
183            },
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186            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
187        },
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195            "lab": {
196                "title": "Ryan Corces, Gladstone Institute UCSF"
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200            "summary": "single-nucleus ATAC-seq (10x multiome)"
201        },
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207            ],
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209            "lab": {
210                "title": "Ryan Corces, Gladstone Institute UCSF"
211            },
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213            "status": "preview",
214            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
215        },
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223            "lab": {
224                "title": "Ryan Corces, Gladstone Institute UCSF"
225            },
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227            "status": "preview",
228            "summary": "single-nucleus ATAC-seq (10x multiome)"
229        },
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238                "title": "Ryan Corces, Gladstone Institute UCSF"
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241            "status": "preview",
242            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
243        },
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251            "lab": {
252                "title": "Ryan Corces, Gladstone Institute UCSF"
253            },
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255            "status": "preview",
256            "summary": "single-nucleus ATAC-seq (10x multiome)"
257        },
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265            "lab": {
266                "title": "Ryan Corces, Gladstone Institute UCSF"
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270            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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280                "title": "Ryan Corces, Gladstone Institute UCSF"
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283            "status": "preview",
284            "summary": "single-nucleus ATAC-seq (10x multiome)"
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293            "lab": {
294                "title": "Ryan Corces, Gladstone Institute UCSF"
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296            "preferred_assay_title": "10x multiome",
297            "status": "preview",
298            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
299        },
300        {
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307            "lab": {
308                "title": "Ryan Corces, Gladstone Institute UCSF"
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311            "status": "preview",
312            "summary": "single-nucleus ATAC-seq (10x multiome)"
313        },
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321            "lab": {
322                "title": "Ryan Corces, Gladstone Institute UCSF"
323            },
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325            "status": "preview",
326            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
327        },
328        {
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330            "accession": "IGVFDS9737XPAG",
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335            "lab": {
336                "title": "Ryan Corces, Gladstone Institute UCSF"
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339            "status": "preview",
340            "summary": "single-nucleus ATAC-seq (10x multiome)"
341        },
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349            "lab": {
350                "title": "Ryan Corces, Gladstone Institute UCSF"
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354            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
355        },
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364                "title": "Ryan Corces, Gladstone Institute UCSF"
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368            "summary": "single-nucleus ATAC-seq (10x multiome)"
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377            "lab": {
378                "title": "Ryan Corces, Gladstone Institute UCSF"
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381            "status": "preview",
382            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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392                "title": "Ryan Corces, Gladstone Institute UCSF"
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395            "status": "preview",
396            "summary": "single-nucleus ATAC-seq (10x multiome)"
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406                "title": "Ryan Corces, Gladstone Institute UCSF"
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410            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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420                "title": "Ryan Corces, Gladstone Institute UCSF"
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434                "title": "Ryan Corces, Gladstone Institute UCSF"
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462                "title": "Ryan Corces, Gladstone Institute UCSF"
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466            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
467        },
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476                "title": "Ryan Corces, Gladstone Institute UCSF"
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480            "summary": "single-nucleus ATAC-seq (10x multiome)"
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490                "title": "Ryan Corces, Gladstone Institute UCSF"
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493            "status": "preview",
494            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
495        }
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502            "status": "in progress"
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504    ],
505    "lab": {
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507        "title": "Ryan Corces, Gladstone Institute UCSF"
508    },
509    "lower_bound_age": 75,
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537        {
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540            "status": "preview"
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542        {
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545            "status": "preview"
546        },
547        {
548            "@id": "/multiplexed-samples/IGVFSM5442PEFD/",
549            "accession": "IGVFSM5442PEFD",
550            "status": "preview"
551        },
552        {
553            "@id": "/multiplexed-samples/IGVFSM8981GXZB/",
554            "accession": "IGVFSM8981GXZB",
555            "status": "preview"
556        },
557        {
558            "@id": "/multiplexed-samples/IGVFSM2055PXMF/",
559            "accession": "IGVFSM2055PXMF",
560            "status": "preview"
561        },
562        {
563            "@id": "/multiplexed-samples/IGVFSM5451ZFAE/",
564            "accession": "IGVFSM5451ZFAE",
565            "status": "preview"
566        },
567        {
568            "@id": "/multiplexed-samples/IGVFSM3126EQPY/",
569            "accession": "IGVFSM3126EQPY",
570            "status": "preview"
571        },
572        {
573            "@id": "/multiplexed-samples/IGVFSM9956HBLE/",
574            "accession": "IGVFSM9956HBLE",
575            "status": "preview"
576        },
577        {
578            "@id": "/multiplexed-samples/IGVFSM7086NABQ/",
579            "accession": "IGVFSM7086NABQ",
580            "status": "preview"
581        },
582        {
583            "@id": "/multiplexed-samples/IGVFSM8749HWYK/",
584            "accession": "IGVFSM8749HWYK",
585            "status": "preview"
586        },
587        {
588            "@id": "/multiplexed-samples/IGVFSM6509YCTF/",
589            "accession": "IGVFSM6509YCTF",
590            "status": "preview"
591        }
592    ],
593    "origin_of": [],
594    "part_of": "/tissues/IGVFSM5549FWPW/",
595    "parts": [],
596    "pmi": 150,
597    "pmi_units": "minute",
598    "pooled_in": [],
599    "preservation_method": "flash-freezing",
600    "protocols": [
601        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
602    ],
603    "sample_terms": [
604        {
605            "@id": "/sample-terms/UBERON_0002740/",
606            "status": "preview",
607            "term_name": "posterior cingulate gyrus"
608        }
609    ],
610    "schema_version": "21",
611    "sex": "female",
612    "sorted_fractions": [],
613    "sources": [
614        {
615            "@id": "/sources/banner-health/",
616            "status": "released",
617            "title": "Banner Health"
618        }
619    ],
620    "status": "preview",
621    "submitted_by": {
622        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
623        "title": "Ryan Corces"
624    },
625    "summary": "Homo sapiens (female, 75 years) posterior cingulate gyrus tissue",
626    "taxa": "Homo sapiens",
627    "upper_bound_age": 75,
628    "upper_bound_age_in_hours": 657000,
629    "uuid": "f0ecb09a-3821-42a2-a333-f5a7dfd0e596",
630    "virtual": false
631}