posterior cingulate gyrus — IGVFSM2594UAVC

1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM2594UAVC/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM2594UAVC",
11    "age": "89",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN0341_CING"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing CCF ID",
20                "detail": "Tissue [IGVFSM2594UAVC](/tissues/IGVFSM2594UAVC/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_tissue_ccf_id",
24                "path": "/tissues/IGVFSM2594UAVC/"
25            }
26        ]
27    },
28    "award": {
29        "@id": "/awards/HG012076/",
30        "component": "mapping"
31    },
32    "classifications": [
33        "tissue"
34    ],
35    "creation_timestamp": "2025-03-19T04:12:31.288077+00:00",
36    "date_obtained": "2023-02-01",
37    "donors": [
38        {
39            "@id": "/human-donors/IGVFDO7754VJKM/",
40            "accession": "IGVFDO7754VJKM",
41            "ethnicities": [
42                "European"
43            ],
44            "status": "preview"
45        }
46    ],
47    "file_sets": [
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50            "accession": "IGVFDS2132XMHB",
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52                "igvf:corces_measurementSet_X032_G4_ATAC"
53            ],
54            "file_set_type": "experimental data",
55            "lab": {
56                "title": "Ryan Corces, Gladstone Institute UCSF"
57            },
58            "preferred_assay_title": "10x multiome",
59            "status": "preview",
60            "summary": "single-nucleus ATAC-seq (10x multiome)"
61        },
62        {
63            "@id": "/measurement-sets/IGVFDS3071WPNU/",
64            "accession": "IGVFDS3071WPNU",
65            "aliases": [
66                "igvf:corces_measurementSet_X032_G4_RNA"
67            ],
68            "file_set_type": "experimental data",
69            "lab": {
70                "title": "Ryan Corces, Gladstone Institute UCSF"
71            },
72            "preferred_assay_title": "10x multiome",
73            "status": "preview",
74            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
75        },
76        {
77            "@id": "/measurement-sets/IGVFDS2336BWET/",
78            "accession": "IGVFDS2336BWET",
79            "aliases": [
80                "igvf:corces_measurementSet_X032_G8_ATAC"
81            ],
82            "file_set_type": "experimental data",
83            "lab": {
84                "title": "Ryan Corces, Gladstone Institute UCSF"
85            },
86            "preferred_assay_title": "10x multiome",
87            "status": "preview",
88            "summary": "single-nucleus ATAC-seq (10x multiome)"
89        },
90        {
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92            "accession": "IGVFDS7019JXXD",
93            "aliases": [
94                "igvf:corces_measurementSet_X032_G8_RNA"
95            ],
96            "file_set_type": "experimental data",
97            "lab": {
98                "title": "Ryan Corces, Gladstone Institute UCSF"
99            },
100            "preferred_assay_title": "10x multiome",
101            "status": "preview",
102            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
103        },
104        {
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106            "accession": "IGVFDS3080TIMY",
107            "aliases": [
108                "igvf:corces_measurementSet_X032_G1_ATAC"
109            ],
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111            "lab": {
112                "title": "Ryan Corces, Gladstone Institute UCSF"
113            },
114            "preferred_assay_title": "10x multiome",
115            "status": "preview",
116            "summary": "single-nucleus ATAC-seq (10x multiome)"
117        },
118        {
119            "@id": "/measurement-sets/IGVFDS3535IMWQ/",
120            "accession": "IGVFDS3535IMWQ",
121            "aliases": [
122                "igvf:corces_measurementSet_X032_G1_RNA"
123            ],
124            "file_set_type": "experimental data",
125            "lab": {
126                "title": "Ryan Corces, Gladstone Institute UCSF"
127            },
128            "preferred_assay_title": "10x multiome",
129            "status": "preview",
130            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
131        },
132        {
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134            "accession": "IGVFDS4088CJJR",
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136                "igvf:corces_measurementSet_X032_G7_ATAC"
137            ],
138            "file_set_type": "experimental data",
139            "lab": {
140                "title": "Ryan Corces, Gladstone Institute UCSF"
141            },
142            "preferred_assay_title": "10x multiome",
143            "status": "preview",
144            "summary": "single-nucleus ATAC-seq (10x multiome)"
145        },
146        {
147            "@id": "/measurement-sets/IGVFDS7706LHLI/",
148            "accession": "IGVFDS7706LHLI",
149            "aliases": [
150                "igvf:corces_measurementSet_X032_G7_RNA"
151            ],
152            "file_set_type": "experimental data",
153            "lab": {
154                "title": "Ryan Corces, Gladstone Institute UCSF"
155            },
156            "preferred_assay_title": "10x multiome",
157            "status": "preview",
158            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
159        },
160        {
161            "@id": "/measurement-sets/IGVFDS7833BTPG/",
162            "accession": "IGVFDS7833BTPG",
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164                "igvf:corces_measurementSet_X032_G3_ATAC"
165            ],
166            "file_set_type": "experimental data",
167            "lab": {
168                "title": "Ryan Corces, Gladstone Institute UCSF"
169            },
170            "preferred_assay_title": "10x multiome",
171            "status": "preview",
172            "summary": "single-nucleus ATAC-seq (10x multiome)"
173        },
174        {
175            "@id": "/measurement-sets/IGVFDS9057KJEI/",
176            "accession": "IGVFDS9057KJEI",
177            "aliases": [
178                "igvf:corces_measurementSet_X032_G3_RNA"
179            ],
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181            "lab": {
182                "title": "Ryan Corces, Gladstone Institute UCSF"
183            },
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185            "status": "preview",
186            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
187        },
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195            "lab": {
196                "title": "Ryan Corces, Gladstone Institute UCSF"
197            },
198            "preferred_assay_title": "10x multiome",
199            "status": "preview",
200            "summary": "single-nucleus ATAC-seq (10x multiome)"
201        },
202        {
203            "@id": "/measurement-sets/IGVFDS0346MQLV/",
204            "accession": "IGVFDS0346MQLV",
205            "aliases": [
206                "igvf:corces_measurementSet_X032_G2_RNA"
207            ],
208            "file_set_type": "experimental data",
209            "lab": {
210                "title": "Ryan Corces, Gladstone Institute UCSF"
211            },
212            "preferred_assay_title": "10x multiome",
213            "status": "preview",
214            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
215        },
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218            "accession": "IGVFDS5776BDPL",
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220                "igvf:corces_measurementSet_X032_G5_ATAC"
221            ],
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223            "lab": {
224                "title": "Ryan Corces, Gladstone Institute UCSF"
225            },
226            "preferred_assay_title": "10x multiome",
227            "status": "preview",
228            "summary": "single-nucleus ATAC-seq (10x multiome)"
229        },
230        {
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232            "accession": "IGVFDS6220QSDQ",
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234                "igvf:corces_measurementSet_X032_G5_RNA"
235            ],
236            "file_set_type": "experimental data",
237            "lab": {
238                "title": "Ryan Corces, Gladstone Institute UCSF"
239            },
240            "preferred_assay_title": "10x multiome",
241            "status": "preview",
242            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
243        },
244        {
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246            "accession": "IGVFDS2723SVTT",
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248                "igvf:corces_measurementSet_X032_G6_ATAC"
249            ],
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251            "lab": {
252                "title": "Ryan Corces, Gladstone Institute UCSF"
253            },
254            "preferred_assay_title": "10x multiome",
255            "status": "preview",
256            "summary": "single-nucleus ATAC-seq (10x multiome)"
257        },
258        {
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262                "igvf:corces_measurementSet_X032_G6_RNA"
263            ],
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265            "lab": {
266                "title": "Ryan Corces, Gladstone Institute UCSF"
267            },
268            "preferred_assay_title": "10x multiome",
269            "status": "preview",
270            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
271        },
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276                "igvf:corces_measurementSet_RP029_G4_ATAC"
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279            "lab": {
280                "title": "Ryan Corces, Gladstone Institute UCSF"
281            },
282            "preferred_assay_title": "10x multiome",
283            "status": "preview",
284            "summary": "single-nucleus ATAC-seq (10x multiome)"
285        },
286        {
287            "@id": "/measurement-sets/IGVFDS2331GZHK/",
288            "accession": "IGVFDS2331GZHK",
289            "aliases": [
290                "igvf:corces_measurementSet_RP029_G4_RNA"
291            ],
292            "file_set_type": "experimental data",
293            "lab": {
294                "title": "Ryan Corces, Gladstone Institute UCSF"
295            },
296            "preferred_assay_title": "10x multiome",
297            "status": "preview",
298            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
299        },
300        {
301            "@id": "/measurement-sets/IGVFDS8090LODL/",
302            "accession": "IGVFDS8090LODL",
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304                "igvf:corces_measurementSet_RP029_G2_ATAC"
305            ],
306            "file_set_type": "experimental data",
307            "lab": {
308                "title": "Ryan Corces, Gladstone Institute UCSF"
309            },
310            "preferred_assay_title": "10x multiome",
311            "status": "preview",
312            "summary": "single-nucleus ATAC-seq (10x multiome)"
313        },
314        {
315            "@id": "/measurement-sets/IGVFDS1460TTLQ/",
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317            "aliases": [
318                "igvf:corces_measurementSet_RP029_G2_RNA"
319            ],
320            "file_set_type": "experimental data",
321            "lab": {
322                "title": "Ryan Corces, Gladstone Institute UCSF"
323            },
324            "preferred_assay_title": "10x multiome",
325            "status": "preview",
326            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
327        },
328        {
329            "@id": "/measurement-sets/IGVFDS1260SOEX/",
330            "accession": "IGVFDS1260SOEX",
331            "aliases": [
332                "igvf:corces_measurementSet_RP029_G6_ATAC"
333            ],
334            "file_set_type": "experimental data",
335            "lab": {
336                "title": "Ryan Corces, Gladstone Institute UCSF"
337            },
338            "preferred_assay_title": "10x multiome",
339            "status": "preview",
340            "summary": "single-nucleus ATAC-seq (10x multiome)"
341        },
342        {
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344            "accession": "IGVFDS3236ZDII",
345            "aliases": [
346                "igvf:corces_measurementSet_RP029_G6_RNA"
347            ],
348            "file_set_type": "experimental data",
349            "lab": {
350                "title": "Ryan Corces, Gladstone Institute UCSF"
351            },
352            "preferred_assay_title": "10x multiome",
353            "status": "preview",
354            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
355        },
356        {
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358            "accession": "IGVFDS9401BHSV",
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363            "lab": {
364                "title": "Ryan Corces, Gladstone Institute UCSF"
365            },
366            "preferred_assay_title": "10x multiome",
367            "status": "preview",
368            "summary": "single-nucleus ATAC-seq (10x multiome)"
369        },
370        {
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374                "igvf:corces_measurementSet_RP029_G1_RNA"
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377            "lab": {
378                "title": "Ryan Corces, Gladstone Institute UCSF"
379            },
380            "preferred_assay_title": "10x multiome",
381            "status": "preview",
382            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
383        },
384        {
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386            "accession": "IGVFDS1932PIPJ",
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388                "igvf:corces_measurementSet_RP029_G3_RNA"
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391            "lab": {
392                "title": "Ryan Corces, Gladstone Institute UCSF"
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395            "status": "preview",
396            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
397        },
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405            "lab": {
406                "title": "Ryan Corces, Gladstone Institute UCSF"
407            },
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409            "status": "preview",
410            "summary": "single-nucleus ATAC-seq (10x multiome)"
411        },
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419            "lab": {
420                "title": "Ryan Corces, Gladstone Institute UCSF"
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423            "status": "preview",
424            "summary": "single-nucleus ATAC-seq (10x multiome)"
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433            "lab": {
434                "title": "Ryan Corces, Gladstone Institute UCSF"
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438            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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448                "title": "Ryan Corces, Gladstone Institute UCSF"
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451            "status": "preview",
452            "summary": "single-nucleus ATAC-seq (10x multiome)"
453        },
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461            "lab": {
462                "title": "Ryan Corces, Gladstone Institute UCSF"
463            },
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465            "status": "preview",
466            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
467        },
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475            "lab": {
476                "title": "Ryan Corces, Gladstone Institute UCSF"
477            },
478            "preferred_assay_title": "10x multiome",
479            "status": "preview",
480            "summary": "single-nucleus ATAC-seq (10x multiome)"
481        },
482        {
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489            "lab": {
490                "title": "Ryan Corces, Gladstone Institute UCSF"
491            },
492            "preferred_assay_title": "10x multiome",
493            "status": "preview",
494            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
495        }
496    ],
497    "institutional_certificates": [
498        {
499            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
500            "certificate_identifier": "IP115-05",
501            "controlled_access": false,
502            "status": "in progress"
503        }
504    ],
505    "lab": {
506        "@id": "/labs/ryan-corces/",
507        "title": "Ryan Corces, Gladstone Institute UCSF"
508    },
509    "lower_bound_age": 89,
510    "lower_bound_age_in_hours": 779640,
511    "multiplexed_in": [
512        {
513            "@id": "/multiplexed-samples/IGVFSM5595EQCW/",
514            "accession": "IGVFSM5595EQCW",
515            "status": "preview"
516        },
517        {
518            "@id": "/multiplexed-samples/IGVFSM8574LYFF/",
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520            "status": "preview"
521        },
522        {
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524            "accession": "IGVFSM6835GLQE",
525            "status": "preview"
526        },
527        {
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530            "status": "preview"
531        },
532        {
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534            "accession": "IGVFSM7956ZXDL",
535            "status": "preview"
536        },
537        {
538            "@id": "/multiplexed-samples/IGVFSM8298WTCX/",
539            "accession": "IGVFSM8298WTCX",
540            "status": "preview"
541        },
542        {
543            "@id": "/multiplexed-samples/IGVFSM8487OHPZ/",
544            "accession": "IGVFSM8487OHPZ",
545            "status": "preview"
546        },
547        {
548            "@id": "/multiplexed-samples/IGVFSM8028VLKJ/",
549            "accession": "IGVFSM8028VLKJ",
550            "status": "preview"
551        },
552        {
553            "@id": "/multiplexed-samples/IGVFSM9093UXXC/",
554            "accession": "IGVFSM9093UXXC",
555            "status": "preview"
556        },
557        {
558            "@id": "/multiplexed-samples/IGVFSM2738AFKG/",
559            "accession": "IGVFSM2738AFKG",
560            "status": "preview"
561        },
562        {
563            "@id": "/multiplexed-samples/IGVFSM1252DLAM/",
564            "accession": "IGVFSM1252DLAM",
565            "status": "preview"
566        },
567        {
568            "@id": "/multiplexed-samples/IGVFSM5907AKIS/",
569            "accession": "IGVFSM5907AKIS",
570            "status": "preview"
571        },
572        {
573            "@id": "/multiplexed-samples/IGVFSM0019MOAR/",
574            "accession": "IGVFSM0019MOAR",
575            "status": "preview"
576        },
577        {
578            "@id": "/multiplexed-samples/IGVFSM8863JLWX/",
579            "accession": "IGVFSM8863JLWX",
580            "status": "preview"
581        },
582        {
583            "@id": "/multiplexed-samples/IGVFSM3839YDOW/",
584            "accession": "IGVFSM3839YDOW",
585            "status": "preview"
586        },
587        {
588            "@id": "/multiplexed-samples/IGVFSM9143IXZW/",
589            "accession": "IGVFSM9143IXZW",
590            "status": "preview"
591        }
592    ],
593    "origin_of": [],
594    "parts": [],
595    "pmi": 150,
596    "pmi_units": "minute",
597    "pooled_in": [],
598    "preservation_method": "flash-freezing",
599    "protocols": [
600        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
601    ],
602    "sample_terms": [
603        {
604            "@id": "/sample-terms/UBERON_0002740/",
605            "status": "preview",
606            "term_name": "posterior cingulate gyrus"
607        }
608    ],
609    "schema_version": "21",
610    "sex": "male",
611    "sorted_fractions": [],
612    "sources": [
613        {
614            "@id": "/sources/banner-health/",
615            "status": "released",
616            "title": "Banner Health"
617        }
618    ],
619    "status": "preview",
620    "submitted_by": {
621        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
622        "title": "Ryan Corces"
623    },
624    "summary": "Homo sapiens (male, 89 years) posterior cingulate gyrus tissue",
625    "taxa": "Homo sapiens",
626    "upper_bound_age": 89,
627    "upper_bound_age_in_hours": 779640,
628    "uuid": "3bf6e68d-74af-4f19-b738-4230f0b1fe92",
629    "virtual": false
630}