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substantia nigra — IGVFSM2586GUMX

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This object is in preview status. Metadata is subject to change until this object is released.
Summary
Homo sapiens (male, 85 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment
Sample Terms
Sex
male
Age
85 years
Post-mortem Interval
165 minutes
Preservation Method
flash-freezing
Taxa
Homo sapiens
Sources
banner-health
Date Harvested
November 22, 2022
Aliases
igvf:corces_tissue_BANN1083_SN
Protocols

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:corces_donor_BANN1083
male
Homo sapiens

File Sets

24 items
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP015_G3_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_RP015_G4_ATAC
Ryan Corces, Gladstone Institute UCSF
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_RP015_G3_ATAC
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP015_G1_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_X018_G4_ATAC
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_X018_G2_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_X018_G6_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_X018_G4_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_X018_G7_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_X018_G1_ATAC
Ryan Corces, Gladstone Institute UCSF

Multiplexed In Samples

12 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 72 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (female, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 72 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (female, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 72 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (female, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 72 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (male, 73 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 73 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (male, 73 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 73 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (male, 73 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 73 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (male, 73 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 73 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (male, 73 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 73 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (male, 73 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 73 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF