{
"@context": "/terms/",
"@id": "/tissues/IGVFSM2508CHNV/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2508CHNV",
"age": "88",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN1344_MTG"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM2508CHNV](/tissues/IGVFSM2508CHNV/) has in progress subobject phenotype term [DOID_0080832](/phenotype-terms/DOID_0080832/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM2508CHNV/"
},
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM2508CHNV](/tissues/IGVFSM2508CHNV/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM2508CHNV/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM2508CHNV](/tissues/IGVFSM2508CHNV/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM2508CHNV/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T04:14:50.573116+00:00",
"date_obtained": "2023-03-09",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO0180JQCL/",
"accession": "IGVFDO0180JQCL",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS7541UESD/",
"accession": "IGVFDS7541UESD",
"aliases": [
"igvf:corces_measurementSet_X043_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3051BOLR/",
"accession": "IGVFDS3051BOLR",
"aliases": [
"igvf:corces_measurementSet_X043_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1183UPFU/",
"accession": "IGVFDS1183UPFU",
"aliases": [
"igvf:corces_measurementSet_X043_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7064HWUF/",
"accession": "IGVFDS7064HWUF",
"aliases": [
"igvf:corces_measurementSet_X043_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3112XAVR/",
"accession": "IGVFDS3112XAVR",
"aliases": [
"igvf:corces_measurementSet_X043_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9925XOYW/",
"accession": "IGVFDS9925XOYW",
"aliases": [
"igvf:corces_measurementSet_X043_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7430EPZO/",
"accession": "IGVFDS7430EPZO",
"aliases": [
"igvf:corces_measurementSet_X043_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4799JPXW/",
"accession": "IGVFDS4799JPXW",
"aliases": [
"igvf:corces_measurementSet_X043_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2974GKCU/",
"accession": "IGVFDS2974GKCU",
"aliases": [
"igvf:corces_measurementSet_X043_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2387DOUT/",
"accession": "IGVFDS2387DOUT",
"aliases": [
"igvf:corces_measurementSet_X043_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2338IVRI/",
"accession": "IGVFDS2338IVRI",
"aliases": [
"igvf:corces_measurementSet_X043_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1850AJMC/",
"accession": "IGVFDS1850AJMC",
"aliases": [
"igvf:corces_measurementSet_X043_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9162IPID/",
"accession": "IGVFDS9162IPID",
"aliases": [
"igvf:corces_measurementSet_X043_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4338UWWQ/",
"accession": "IGVFDS4338UWWQ",
"aliases": [
"igvf:corces_measurementSet_X043_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0624REZE/",
"accession": "IGVFDS0624REZE",
"aliases": [
"igvf:corces_measurementSet_X043_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1061DPBM/",
"accession": "IGVFDS1061DPBM",
"aliases": [
"igvf:corces_measurementSet_X043_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1789AOJS/",
"accession": "IGVFDS1789AOJS",
"aliases": [
"igvf:corces_measurementSet_RP016_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0654UBEH/",
"accession": "IGVFDS0654UBEH",
"aliases": [
"igvf:corces_measurementSet_RP016_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2632MFRG/",
"accession": "IGVFDS2632MFRG",
"aliases": [
"igvf:corces_measurementSet_RP016_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6041MPRO/",
"accession": "IGVFDS6041MPRO",
"aliases": [
"igvf:corces_measurementSet_RP016_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4019QZRA/",
"accession": "IGVFDS4019QZRA",
"aliases": [
"igvf:corces_measurementSet_RP016_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2358CIEU/",
"accession": "IGVFDS2358CIEU",
"aliases": [
"igvf:corces_measurementSet_RP016_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4230IWLA/",
"accession": "IGVFDS4230IWLA",
"aliases": [
"igvf:corces_measurementSet_RP016_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5966SBIL/",
"accession": "IGVFDS5966SBIL",
"aliases": [
"igvf:corces_measurementSet_RP016_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 88,
"lower_bound_age_in_hours": 770880,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM7586ZAET/",
"accession": "IGVFSM7586ZAET",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2344WXDM/",
"accession": "IGVFSM2344WXDM",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6578YJBX/",
"accession": "IGVFSM6578YJBX",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1854LWZV/",
"accession": "IGVFSM1854LWZV",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7715ZYTK/",
"accession": "IGVFSM7715ZYTK",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7038GUII/",
"accession": "IGVFSM7038GUII",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8592YDYJ/",
"accession": "IGVFSM8592YDYJ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9265WOCK/",
"accession": "IGVFSM9265WOCK",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6883HPJP/",
"accession": "IGVFSM6883HPJP",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8384TDSY/",
"accession": "IGVFSM8384TDSY",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6715EBSB/",
"accession": "IGVFSM6715EBSB",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM5645JDME/",
"accession": "IGVFSM5645JDME",
"status": "preview"
}
],
"origin_of": [],
"parts": [],
"pmi": 240,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"schema_version": "21",
"sex": "female",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (female, 88 years) middle temporal gyrus tissue associated with Parkinson's disease, mild cognitive impairment",
"taxa": "Homo sapiens",
"upper_bound_age": 88,
"upper_bound_age_in_hours": 770880,
"uuid": "b5c2f3f3-bb9c-473d-9dd8-9eb40b1b2bb2",
"virtual": false
}