middle temporal gyrus — IGVFSM2445XLUQ

preview
1{
2    "@context": "/terms/",
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4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
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11    "age": "84",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1959_MTG"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM2445XLUQ](/tissues/IGVFSM2445XLUQ/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM2445XLUQ/"
25            },
26            {
27                "category": "missing CCF ID",
28                "detail": "Tissue [IGVFSM2445XLUQ](/tissues/IGVFSM2445XLUQ/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_tissue_ccf_id",
32                "path": "/tissues/IGVFSM2445XLUQ/"
33            }
34        ]
35    },
36    "award": {
37        "@id": "/awards/HG012076/",
38        "component": "mapping"
39    },
40    "classifications": [
41        "tissue"
42    ],
43    "creation_timestamp": "2025-03-19T04:11:01.701445+00:00",
44    "date_obtained": "2023-01-04",
45    "disease_terms": [
46        {
47            "@id": "/phenotype-terms/DOID_14330/",
48            "status": "in progress",
49            "term_name": "Parkinson's disease"
50        }
51    ],
52    "donors": [
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55            "accession": "IGVFDO3501RYHX",
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57                "European"
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72            },
73            "preferred_assay_title": "10x multiome",
74            "status": "preview",
75            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
76        },
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103            "summary": "single-nucleus ATAC-seq (10x multiome)"
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169                "title": "Ryan Corces, Gladstone Institute UCSF"
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174        },
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183                "title": "Ryan Corces, Gladstone Institute UCSF"
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211                "title": "Ryan Corces, Gladstone Institute UCSF"
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225                "title": "Ryan Corces, Gladstone Institute UCSF"
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229            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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238            "lab": {
239                "title": "Ryan Corces, Gladstone Institute UCSF"
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242            "status": "preview",
243            "summary": "single-nucleus ATAC-seq (10x multiome)"
244        },
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253                "title": "Ryan Corces, Gladstone Institute UCSF"
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267                "title": "Ryan Corces, Gladstone Institute UCSF"
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323                "title": "Ryan Corces, Gladstone Institute UCSF"
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351                "title": "Ryan Corces, Gladstone Institute UCSF"
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624    "institutional_certificates": [
625        {
626            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
627            "certificate_identifier": "IP115-05",
628            "controlled_access": false,
629            "status": "in progress"
630        }
631    ],
632    "lab": {
633        "@id": "/labs/ryan-corces/",
634        "title": "Ryan Corces, Gladstone Institute UCSF"
635    },
636    "lower_bound_age": 84,
637    "lower_bound_age_in_hours": 735840,
638    "multiplexed_in": [
639        {
640            "@id": "/multiplexed-samples/IGVFSM4247PWXS/",
641            "accession": "IGVFSM4247PWXS",
642            "status": "preview"
643        },
644        {
645            "@id": "/multiplexed-samples/IGVFSM4164CREL/",
646            "accession": "IGVFSM4164CREL",
647            "status": "preview"
648        },
649        {
650            "@id": "/multiplexed-samples/IGVFSM4069JELD/",
651            "accession": "IGVFSM4069JELD",
652            "status": "preview"
653        },
654        {
655            "@id": "/multiplexed-samples/IGVFSM5984JPVV/",
656            "accession": "IGVFSM5984JPVV",
657            "status": "preview"
658        },
659        {
660            "@id": "/multiplexed-samples/IGVFSM1883EATC/",
661            "accession": "IGVFSM1883EATC",
662            "status": "preview"
663        },
664        {
665            "@id": "/multiplexed-samples/IGVFSM7556QXIA/",
666            "accession": "IGVFSM7556QXIA",
667            "status": "preview"
668        },
669        {
670            "@id": "/multiplexed-samples/IGVFSM3845CORI/",
671            "accession": "IGVFSM3845CORI",
672            "status": "preview"
673        },
674        {
675            "@id": "/multiplexed-samples/IGVFSM0702KZGF/",
676            "accession": "IGVFSM0702KZGF",
677            "status": "preview"
678        },
679        {
680            "@id": "/multiplexed-samples/IGVFSM7245NHUU/",
681            "accession": "IGVFSM7245NHUU",
682            "status": "preview"
683        },
684        {
685            "@id": "/multiplexed-samples/IGVFSM6589HBYD/",
686            "accession": "IGVFSM6589HBYD",
687            "status": "preview"
688        },
689        {
690            "@id": "/multiplexed-samples/IGVFSM9011XOSL/",
691            "accession": "IGVFSM9011XOSL",
692            "status": "preview"
693        },
694        {
695            "@id": "/multiplexed-samples/IGVFSM5440WCSX/",
696            "accession": "IGVFSM5440WCSX",
697            "status": "preview"
698        },
699        {
700            "@id": "/multiplexed-samples/IGVFSM9612VWVL/",
701            "accession": "IGVFSM9612VWVL",
702            "status": "preview"
703        },
704        {
705            "@id": "/multiplexed-samples/IGVFSM9948JMCE/",
706            "accession": "IGVFSM9948JMCE",
707            "status": "preview"
708        },
709        {
710            "@id": "/multiplexed-samples/IGVFSM2478QXUD/",
711            "accession": "IGVFSM2478QXUD",
712            "status": "preview"
713        },
714        {
715            "@id": "/multiplexed-samples/IGVFSM2298FJZK/",
716            "accession": "IGVFSM2298FJZK",
717            "status": "preview"
718        },
719        {
720            "@id": "/multiplexed-samples/IGVFSM4592JTZF/",
721            "accession": "IGVFSM4592JTZF",
722            "status": "preview"
723        },
724        {
725            "@id": "/multiplexed-samples/IGVFSM7205BZYS/",
726            "accession": "IGVFSM7205BZYS",
727            "status": "preview"
728        },
729        {
730            "@id": "/multiplexed-samples/IGVFSM1273LHSM/",
731            "accession": "IGVFSM1273LHSM",
732            "status": "preview"
733        },
734        {
735            "@id": "/multiplexed-samples/IGVFSM3393RSBM/",
736            "accession": "IGVFSM3393RSBM",
737            "status": "preview"
738        }
739    ],
740    "origin_of": [],
741    "parts": [],
742    "pmi": 244,
743    "pmi_units": "minute",
744    "pooled_in": [],
745    "preservation_method": "flash-freezing",
746    "protocols": [
747        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
748    ],
749    "sample_terms": [
750        {
751            "@id": "/sample-terms/UBERON_0002771/",
752            "status": "preview",
753            "term_name": "middle temporal gyrus"
754        }
755    ],
756    "schema_version": "21",
757    "sex": "male",
758    "sorted_fractions": [],
759    "sources": [
760        {
761            "@id": "/sources/banner-health/",
762            "status": "released",
763            "title": "Banner Health"
764        }
765    ],
766    "status": "preview",
767    "submitted_by": {
768        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
769        "title": "Ryan Corces"
770    },
771    "summary": "Homo sapiens (male, 84 years) middle temporal gyrus tissue associated with Parkinson's disease",
772    "taxa": "Homo sapiens",
773    "upper_bound_age": 84,
774    "upper_bound_age_in_hours": 735840,
775    "uuid": "682ea3b3-5c0a-4356-9719-2f720fb18804",
776    "virtual": false
777}