putamen — IGVFSM2327GAPC

preview
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM2327GAPC/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM2327GAPC",
11    "age": "72",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1864_PUT_B1"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM2327GAPC](/tissues/IGVFSM2327GAPC/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM2327GAPC/"
25            },
26            {
27                "category": "missing CCF ID",
28                "detail": "Tissue [IGVFSM2327GAPC](/tissues/IGVFSM2327GAPC/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_tissue_ccf_id",
32                "path": "/tissues/IGVFSM2327GAPC/"
33            }
34        ]
35    },
36    "award": {
37        "@id": "/awards/HG012076/",
38        "component": "mapping"
39    },
40    "classifications": [
41        "tissue"
42    ],
43    "creation_timestamp": "2025-03-19T12:58:02.293449+00:00",
44    "date_obtained": "2023-01-09",
45    "disease_terms": [
46        {
47            "@id": "/phenotype-terms/DOID_9246/",
48            "status": "in progress",
49            "term_name": "cerebral amyloid angiopathy"
50        }
51    ],
52    "donors": [
53        {
54            "@id": "/human-donors/IGVFDO4170HAEN/",
55            "accession": "IGVFDO4170HAEN",
56            "status": "preview"
57        }
58    ],
59    "file_sets": [
60        {
61            "@id": "/measurement-sets/IGVFDS8041GMRH/",
62            "accession": "IGVFDS8041GMRH",
63            "aliases": [
64                "igvf:corces_measurementSet_X027_G6_ATAC"
65            ],
66            "file_set_type": "experimental data",
67            "lab": {
68                "title": "Ryan Corces, Gladstone Institute UCSF"
69            },
70            "preferred_assay_title": "10x multiome",
71            "status": "preview",
72            "summary": "single-nucleus ATAC-seq (10x multiome)"
73        },
74        {
75            "@id": "/measurement-sets/IGVFDS2756BAFO/",
76            "accession": "IGVFDS2756BAFO",
77            "aliases": [
78                "igvf:corces_measurementSet_X027_G6_RNA"
79            ],
80            "file_set_type": "experimental data",
81            "lab": {
82                "title": "Ryan Corces, Gladstone Institute UCSF"
83            },
84            "preferred_assay_title": "10x multiome",
85            "status": "preview",
86            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
87        },
88        {
89            "@id": "/measurement-sets/IGVFDS4072DYMI/",
90            "accession": "IGVFDS4072DYMI",
91            "aliases": [
92                "igvf:corces_measurementSet_X027_G2_ATAC"
93            ],
94            "file_set_type": "experimental data",
95            "lab": {
96                "title": "Ryan Corces, Gladstone Institute UCSF"
97            },
98            "preferred_assay_title": "10x multiome",
99            "status": "preview",
100            "summary": "single-nucleus ATAC-seq (10x multiome)"
101        },
102        {
103            "@id": "/measurement-sets/IGVFDS8570TBZV/",
104            "accession": "IGVFDS8570TBZV",
105            "aliases": [
106                "igvf:corces_measurementSet_X027_G2_RNA"
107            ],
108            "file_set_type": "experimental data",
109            "lab": {
110                "title": "Ryan Corces, Gladstone Institute UCSF"
111            },
112            "preferred_assay_title": "10x multiome",
113            "status": "preview",
114            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
115        },
116        {
117            "@id": "/measurement-sets/IGVFDS5906ITEG/",
118            "accession": "IGVFDS5906ITEG",
119            "aliases": [
120                "igvf:corces_measurementSet_X027_G8_ATAC"
121            ],
122            "file_set_type": "experimental data",
123            "lab": {
124                "title": "Ryan Corces, Gladstone Institute UCSF"
125            },
126            "preferred_assay_title": "10x multiome",
127            "status": "preview",
128            "summary": "single-nucleus ATAC-seq (10x multiome)"
129        },
130        {
131            "@id": "/measurement-sets/IGVFDS6541QHNV/",
132            "accession": "IGVFDS6541QHNV",
133            "aliases": [
134                "igvf:corces_measurementSet_X027_G8_RNA"
135            ],
136            "file_set_type": "experimental data",
137            "lab": {
138                "title": "Ryan Corces, Gladstone Institute UCSF"
139            },
140            "preferred_assay_title": "10x multiome",
141            "status": "preview",
142            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
143        },
144        {
145            "@id": "/measurement-sets/IGVFDS9990VRCJ/",
146            "accession": "IGVFDS9990VRCJ",
147            "aliases": [
148                "igvf:corces_measurementSet_X027_G5_ATAC"
149            ],
150            "file_set_type": "experimental data",
151            "lab": {
152                "title": "Ryan Corces, Gladstone Institute UCSF"
153            },
154            "preferred_assay_title": "10x multiome",
155            "status": "preview",
156            "summary": "single-nucleus ATAC-seq (10x multiome)"
157        },
158        {
159            "@id": "/measurement-sets/IGVFDS2651QSZQ/",
160            "accession": "IGVFDS2651QSZQ",
161            "aliases": [
162                "igvf:corces_measurementSet_X027_G5_RNA"
163            ],
164            "file_set_type": "experimental data",
165            "lab": {
166                "title": "Ryan Corces, Gladstone Institute UCSF"
167            },
168            "preferred_assay_title": "10x multiome",
169            "status": "preview",
170            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
171        },
172        {
173            "@id": "/measurement-sets/IGVFDS2065OTBK/",
174            "accession": "IGVFDS2065OTBK",
175            "aliases": [
176                "igvf:corces_measurementSet_X027_G4_ATAC"
177            ],
178            "file_set_type": "experimental data",
179            "lab": {
180                "title": "Ryan Corces, Gladstone Institute UCSF"
181            },
182            "preferred_assay_title": "10x multiome",
183            "status": "preview",
184            "summary": "single-nucleus ATAC-seq (10x multiome)"
185        },
186        {
187            "@id": "/measurement-sets/IGVFDS5963QMGC/",
188            "accession": "IGVFDS5963QMGC",
189            "aliases": [
190                "igvf:corces_measurementSet_X027_G4_RNA"
191            ],
192            "file_set_type": "experimental data",
193            "lab": {
194                "title": "Ryan Corces, Gladstone Institute UCSF"
195            },
196            "preferred_assay_title": "10x multiome",
197            "status": "preview",
198            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
199        },
200        {
201            "@id": "/measurement-sets/IGVFDS1992RAMQ/",
202            "accession": "IGVFDS1992RAMQ",
203            "aliases": [
204                "igvf:corces_measurementSet_X027_G3_ATAC"
205            ],
206            "file_set_type": "experimental data",
207            "lab": {
208                "title": "Ryan Corces, Gladstone Institute UCSF"
209            },
210            "preferred_assay_title": "10x multiome",
211            "status": "preview",
212            "summary": "single-nucleus ATAC-seq (10x multiome)"
213        },
214        {
215            "@id": "/measurement-sets/IGVFDS5954SSGR/",
216            "accession": "IGVFDS5954SSGR",
217            "aliases": [
218                "igvf:corces_measurementSet_X027_G3_RNA"
219            ],
220            "file_set_type": "experimental data",
221            "lab": {
222                "title": "Ryan Corces, Gladstone Institute UCSF"
223            },
224            "preferred_assay_title": "10x multiome",
225            "status": "preview",
226            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
227        },
228        {
229            "@id": "/measurement-sets/IGVFDS9150VYPU/",
230            "accession": "IGVFDS9150VYPU",
231            "aliases": [
232                "igvf:corces_measurementSet_X027_G1_ATAC"
233            ],
234            "file_set_type": "experimental data",
235            "lab": {
236                "title": "Ryan Corces, Gladstone Institute UCSF"
237            },
238            "preferred_assay_title": "10x multiome",
239            "status": "preview",
240            "summary": "single-nucleus ATAC-seq (10x multiome)"
241        },
242        {
243            "@id": "/measurement-sets/IGVFDS2462EACJ/",
244            "accession": "IGVFDS2462EACJ",
245            "aliases": [
246                "igvf:corces_measurementSet_X027_G1_RNA"
247            ],
248            "file_set_type": "experimental data",
249            "lab": {
250                "title": "Ryan Corces, Gladstone Institute UCSF"
251            },
252            "preferred_assay_title": "10x multiome",
253            "status": "preview",
254            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
255        },
256        {
257            "@id": "/measurement-sets/IGVFDS9153SDXP/",
258            "accession": "IGVFDS9153SDXP",
259            "aliases": [
260                "igvf:corces_measurementSet_X027_G7_ATAC"
261            ],
262            "file_set_type": "experimental data",
263            "lab": {
264                "title": "Ryan Corces, Gladstone Institute UCSF"
265            },
266            "preferred_assay_title": "10x multiome",
267            "status": "preview",
268            "summary": "single-nucleus ATAC-seq (10x multiome)"
269        },
270        {
271            "@id": "/measurement-sets/IGVFDS5301KQFA/",
272            "accession": "IGVFDS5301KQFA",
273            "aliases": [
274                "igvf:corces_measurementSet_X027_G7_RNA"
275            ],
276            "file_set_type": "experimental data",
277            "lab": {
278                "title": "Ryan Corces, Gladstone Institute UCSF"
279            },
280            "preferred_assay_title": "10x multiome",
281            "status": "preview",
282            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
283        },
284        {
285            "@id": "/measurement-sets/IGVFDS8859FDEI/",
286            "accession": "IGVFDS8859FDEI",
287            "aliases": [
288                "igvf:corces_measurementSet_RP015_G2_ATAC"
289            ],
290            "file_set_type": "experimental data",
291            "lab": {
292                "title": "Ryan Corces, Gladstone Institute UCSF"
293            },
294            "preferred_assay_title": "10x multiome",
295            "status": "preview",
296            "summary": "single-nucleus ATAC-seq (10x multiome)"
297        },
298        {
299            "@id": "/measurement-sets/IGVFDS9670KNNR/",
300            "accession": "IGVFDS9670KNNR",
301            "aliases": [
302                "igvf:corces_measurementSet_RP015_G2_RNA"
303            ],
304            "file_set_type": "experimental data",
305            "lab": {
306                "title": "Ryan Corces, Gladstone Institute UCSF"
307            },
308            "preferred_assay_title": "10x multiome",
309            "status": "preview",
310            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
311        },
312        {
313            "@id": "/measurement-sets/IGVFDS1451RVGA/",
314            "accession": "IGVFDS1451RVGA",
315            "aliases": [
316                "igvf:corces_measurementSet_RP015_G3_ATAC"
317            ],
318            "file_set_type": "experimental data",
319            "lab": {
320                "title": "Ryan Corces, Gladstone Institute UCSF"
321            },
322            "preferred_assay_title": "10x multiome",
323            "status": "preview",
324            "summary": "single-nucleus ATAC-seq (10x multiome)"
325        },
326        {
327            "@id": "/measurement-sets/IGVFDS0488NVQB/",
328            "accession": "IGVFDS0488NVQB",
329            "aliases": [
330                "igvf:corces_measurementSet_RP015_G3_RNA"
331            ],
332            "file_set_type": "experimental data",
333            "lab": {
334                "title": "Ryan Corces, Gladstone Institute UCSF"
335            },
336            "preferred_assay_title": "10x multiome",
337            "status": "preview",
338            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
339        },
340        {
341            "@id": "/measurement-sets/IGVFDS0737RQRG/",
342            "accession": "IGVFDS0737RQRG",
343            "aliases": [
344                "igvf:corces_measurementSet_RP015_G4_ATAC"
345            ],
346            "file_set_type": "experimental data",
347            "lab": {
348                "title": "Ryan Corces, Gladstone Institute UCSF"
349            },
350            "preferred_assay_title": "10x multiome",
351            "status": "preview",
352            "summary": "single-nucleus ATAC-seq (10x multiome)"
353        },
354        {
355            "@id": "/measurement-sets/IGVFDS7340HYVJ/",
356            "accession": "IGVFDS7340HYVJ",
357            "aliases": [
358                "igvf:corces_measurementSet_RP015_G4_RNA"
359            ],
360            "file_set_type": "experimental data",
361            "lab": {
362                "title": "Ryan Corces, Gladstone Institute UCSF"
363            },
364            "preferred_assay_title": "10x multiome",
365            "status": "preview",
366            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
367        },
368        {
369            "@id": "/measurement-sets/IGVFDS9379ZJGH/",
370            "accession": "IGVFDS9379ZJGH",
371            "aliases": [
372                "igvf:corces_measurementSet_RP015_G1_ATAC"
373            ],
374            "file_set_type": "experimental data",
375            "lab": {
376                "title": "Ryan Corces, Gladstone Institute UCSF"
377            },
378            "preferred_assay_title": "10x multiome",
379            "status": "preview",
380            "summary": "single-nucleus ATAC-seq (10x multiome)"
381        },
382        {
383            "@id": "/measurement-sets/IGVFDS2939KDMY/",
384            "accession": "IGVFDS2939KDMY",
385            "aliases": [
386                "igvf:corces_measurementSet_RP015_G1_RNA"
387            ],
388            "file_set_type": "experimental data",
389            "lab": {
390                "title": "Ryan Corces, Gladstone Institute UCSF"
391            },
392            "preferred_assay_title": "10x multiome",
393            "status": "preview",
394            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
395        }
396    ],
397    "institutional_certificates": [
398        {
399            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
400            "certificate_identifier": "IP115-05",
401            "controlled_access": false,
402            "status": "in progress"
403        }
404    ],
405    "lab": {
406        "@id": "/labs/ryan-corces/",
407        "title": "Ryan Corces, Gladstone Institute UCSF"
408    },
409    "lower_bound_age": 72,
410    "lower_bound_age_in_hours": 630720,
411    "multiplexed_in": [
412        {
413            "@id": "/multiplexed-samples/IGVFSM0241SZCM/",
414            "accession": "IGVFSM0241SZCM",
415            "status": "preview"
416        },
417        {
418            "@id": "/multiplexed-samples/IGVFSM1917JWNL/",
419            "accession": "IGVFSM1917JWNL",
420            "status": "preview"
421        },
422        {
423            "@id": "/multiplexed-samples/IGVFSM6790VZAC/",
424            "accession": "IGVFSM6790VZAC",
425            "status": "preview"
426        },
427        {
428            "@id": "/multiplexed-samples/IGVFSM8693AIJI/",
429            "accession": "IGVFSM8693AIJI",
430            "status": "preview"
431        },
432        {
433            "@id": "/multiplexed-samples/IGVFSM7900CVVQ/",
434            "accession": "IGVFSM7900CVVQ",
435            "status": "preview"
436        },
437        {
438            "@id": "/multiplexed-samples/IGVFSM3694DWTC/",
439            "accession": "IGVFSM3694DWTC",
440            "status": "preview"
441        },
442        {
443            "@id": "/multiplexed-samples/IGVFSM2801FMBF/",
444            "accession": "IGVFSM2801FMBF",
445            "status": "preview"
446        },
447        {
448            "@id": "/multiplexed-samples/IGVFSM0591JAPP/",
449            "accession": "IGVFSM0591JAPP",
450            "status": "preview"
451        },
452        {
453            "@id": "/multiplexed-samples/IGVFSM3324TBYQ/",
454            "accession": "IGVFSM3324TBYQ",
455            "status": "preview"
456        },
457        {
458            "@id": "/multiplexed-samples/IGVFSM0903NROD/",
459            "accession": "IGVFSM0903NROD",
460            "status": "preview"
461        },
462        {
463            "@id": "/multiplexed-samples/IGVFSM0218TRNG/",
464            "accession": "IGVFSM0218TRNG",
465            "status": "preview"
466        },
467        {
468            "@id": "/multiplexed-samples/IGVFSM1969WJDB/",
469            "accession": "IGVFSM1969WJDB",
470            "status": "preview"
471        }
472    ],
473    "origin_of": [],
474    "part_of": "/tissues/IGVFSM3404JUIR/",
475    "parts": [],
476    "pmi": 276,
477    "pmi_units": "minute",
478    "pooled_in": [],
479    "preservation_method": "flash-freezing",
480    "protocols": [
481        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
482    ],
483    "sample_terms": [
484        {
485            "@id": "/sample-terms/UBERON_0001874/",
486            "status": "preview",
487            "term_name": "putamen"
488        }
489    ],
490    "schema_version": "21",
491    "sex": "male",
492    "sorted_fractions": [],
493    "sources": [
494        {
495            "@id": "/sources/banner-health/",
496            "status": "released",
497            "title": "Banner Health"
498        }
499    ],
500    "status": "preview",
501    "submitted_by": {
502        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
503        "title": "Ryan Corces"
504    },
505    "summary": "Homo sapiens (male, 72 years) putamen tissue associated with cerebral amyloid angiopathy",
506    "taxa": "Homo sapiens",
507    "upper_bound_age": 72,
508    "upper_bound_age_in_hours": 630720,
509    "uuid": "cca914aa-d30e-4d73-bd98-f8e2d4e86415",
510    "virtual": false
511}