{
"@context": "/terms/",
"@id": "/tissues/IGVFSM2187RXSI/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2187RXSI",
"age": "80",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN1614_PUT"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM2187RXSI](/tissues/IGVFSM2187RXSI/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM2187RXSI/"
},
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM2187RXSI](/tissues/IGVFSM2187RXSI/) has in progress subobject phenotype term [DOID_0080832](/phenotype-terms/DOID_0080832/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM2187RXSI/"
},
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM2187RXSI](/tissues/IGVFSM2187RXSI/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM2187RXSI/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM2187RXSI](/tissues/IGVFSM2187RXSI/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM2187RXSI/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T04:11:39.285141+00:00",
"date_obtained": "2023-01-12",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO7227BIXW/",
"accession": "IGVFDO7227BIXW",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS9821UHEX/",
"accession": "IGVFDS9821UHEX",
"aliases": [
"igvf:corces_measurementSet_X028_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9330PDLC/",
"accession": "IGVFDS9330PDLC",
"aliases": [
"igvf:corces_measurementSet_X028_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1524WKTN/",
"accession": "IGVFDS1524WKTN",
"aliases": [
"igvf:corces_measurementSet_X028_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4780LCVB/",
"accession": "IGVFDS4780LCVB",
"aliases": [
"igvf:corces_measurementSet_X028_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0501ORTA/",
"accession": "IGVFDS0501ORTA",
"aliases": [
"igvf:corces_measurementSet_X028_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2675HBRY/",
"accession": "IGVFDS2675HBRY",
"aliases": [
"igvf:corces_measurementSet_X028_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3858ZAQM/",
"accession": "IGVFDS3858ZAQM",
"aliases": [
"igvf:corces_measurementSet_X028_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1013LBEZ/",
"accession": "IGVFDS1013LBEZ",
"aliases": [
"igvf:corces_measurementSet_X028_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3718OSOX/",
"accession": "IGVFDS3718OSOX",
"aliases": [
"igvf:corces_measurementSet_X028_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4319JYXA/",
"accession": "IGVFDS4319JYXA",
"aliases": [
"igvf:corces_measurementSet_X028_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6930SNMF/",
"accession": "IGVFDS6930SNMF",
"aliases": [
"igvf:corces_measurementSet_X028_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8552WQEE/",
"accession": "IGVFDS8552WQEE",
"aliases": [
"igvf:corces_measurementSet_X028_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2315CNRX/",
"accession": "IGVFDS2315CNRX",
"aliases": [
"igvf:corces_measurementSet_X028_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2256ZOZQ/",
"accession": "IGVFDS2256ZOZQ",
"aliases": [
"igvf:corces_measurementSet_X028_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7362VJGH/",
"accession": "IGVFDS7362VJGH",
"aliases": [
"igvf:corces_measurementSet_X028_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0953NSGI/",
"accession": "IGVFDS0953NSGI",
"aliases": [
"igvf:corces_measurementSet_X028_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3035QFKU/",
"accession": "IGVFDS3035QFKU",
"aliases": [
"igvf:corces_measurementSet_RP011_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6373YBDI/",
"accession": "IGVFDS6373YBDI",
"aliases": [
"igvf:corces_measurementSet_RP011_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2229EHIM/",
"accession": "IGVFDS2229EHIM",
"aliases": [
"igvf:corces_measurementSet_RP011_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3628MXUK/",
"accession": "IGVFDS3628MXUK",
"aliases": [
"igvf:corces_measurementSet_RP011_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5362QJCF/",
"accession": "IGVFDS5362QJCF",
"aliases": [
"igvf:corces_measurementSet_RP011_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1279DJVE/",
"accession": "IGVFDS1279DJVE",
"aliases": [
"igvf:corces_measurementSet_RP011_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0856IUPF/",
"accession": "IGVFDS0856IUPF",
"aliases": [
"igvf:corces_measurementSet_RP011_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8611TPMB/",
"accession": "IGVFDS8611TPMB",
"aliases": [
"igvf:corces_measurementSet_RP011_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3484DNVB/",
"accession": "IGVFDS3484DNVB",
"aliases": [
"igvf:corces_measurementSet_RP011_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3602NEYS/",
"accession": "IGVFDS3602NEYS",
"aliases": [
"igvf:corces_measurementSet_RP011_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5146PTIC/",
"accession": "IGVFDS5146PTIC",
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"igvf:corces_measurementSet_RP011_G7_ATAC"
],
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"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2300TLPU/",
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"aliases": [
"igvf:corces_measurementSet_RP011_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0831CAYJ/",
"accession": "IGVFDS0831CAYJ",
"aliases": [
"igvf:corces_measurementSet_RP011_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4334WKOE/",
"accession": "IGVFDS4334WKOE",
"aliases": [
"igvf:corces_measurementSet_RP011_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8666KHZN/",
"accession": "IGVFDS8666KHZN",
"aliases": [
"igvf:corces_measurementSet_RP011_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7806UOQI/",
"accession": "IGVFDS7806UOQI",
"aliases": [
"igvf:corces_measurementSet_RP011_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 80,
"lower_bound_age_in_hours": 700800,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM6259JSXN/",
"accession": "IGVFSM6259JSXN",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7150ADFP/",
"accession": "IGVFSM7150ADFP",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4873ZKQI/",
"accession": "IGVFSM4873ZKQI",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2664KMPG/",
"accession": "IGVFSM2664KMPG",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1341HRWL/",
"accession": "IGVFSM1341HRWL",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4526FRYV/",
"accession": "IGVFSM4526FRYV",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8232WDCF/",
"accession": "IGVFSM8232WDCF",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9719AYTK/",
"accession": "IGVFSM9719AYTK",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3747QRCH/",
"accession": "IGVFSM3747QRCH",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4137SEKT/",
"accession": "IGVFSM4137SEKT",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0695RJYV/",
"accession": "IGVFSM0695RJYV",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6926MVZN/",
"accession": "IGVFSM6926MVZN",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0643EUKR/",
"accession": "IGVFSM0643EUKR",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM5471WRIH/",
"accession": "IGVFSM5471WRIH",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9332LJBD/",
"accession": "IGVFSM9332LJBD",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9347ZBKI/",
"accession": "IGVFSM9347ZBKI",
"status": "preview"
}
],
"origin_of": [],
"parts": [],
"pmi": 156,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"status": "preview",
"term_name": "putamen"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 80 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment",
"taxa": "Homo sapiens",
"upper_bound_age": 80,
"upper_bound_age_in_hours": 700800,
"uuid": "90febf28-3f68-4343-b844-d6811d682875",
"virtual": false
}