putamen — IGVFSM2187RXSI

{
    "@context": "/terms/",
    "@id": "/tissues/IGVFSM2187RXSI/",
    "@type": [
        "Tissue",
        "Biosample",
        "Sample",
        "Item"
    ],
    "accession": "IGVFSM2187RXSI",
    "age": "80",
    "age_units": "year",
    "aliases": [
        "igvf:corces_tissue_BANN1614_PUT"
    ],
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Preview tissue [IGVFSM2187RXSI](/tissues/IGVFSM2187RXSI/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/tissues/IGVFSM2187RXSI/"
            },
            {
                "category": "mismatched status",
                "detail": "Preview tissue [IGVFSM2187RXSI](/tissues/IGVFSM2187RXSI/) has in progress subobject phenotype term [DOID_0080832](/phenotype-terms/DOID_0080832/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/tissues/IGVFSM2187RXSI/"
            },
            {
                "category": "mismatched status",
                "detail": "Preview tissue [IGVFSM2187RXSI](/tissues/IGVFSM2187RXSI/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/tissues/IGVFSM2187RXSI/"
            },
            {
                "category": "missing CCF ID",
                "detail": "Tissue [IGVFSM2187RXSI](/tissues/IGVFSM2187RXSI/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_tissue_ccf_id",
                "path": "/tissues/IGVFSM2187RXSI/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "classifications": [
        "tissue"
    ],
    "creation_timestamp": "2025-03-19T04:11:39.285141+00:00",
    "date_obtained": "2023-01-12",
    "disease_terms": [
        {
            "@id": "/phenotype-terms/DOID_14330/",
            "status": "in progress",
            "term_name": "Parkinson's disease"
        },
        {
            "@id": "/phenotype-terms/DOID_9246/",
            "status": "in progress",
            "term_name": "cerebral amyloid angiopathy"
        },
        {
            "@id": "/phenotype-terms/DOID_0080832/",
            "status": "in progress",
            "term_name": "mild cognitive impairment"
        }
    ],
    "donors": [
        {
            "@id": "/human-donors/IGVFDO7227BIXW/",
            "accession": "IGVFDO7227BIXW",
            "ethnicities": [
                "European"
            ],
            "status": "preview"
        }
    ],
    "file_sets": [
        {
            "@id": "/measurement-sets/IGVFDS9821UHEX/",
            "accession": "IGVFDS9821UHEX",
            "aliases": [
                "igvf:corces_measurementSet_X028_G1_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS9330PDLC/",
            "accession": "IGVFDS9330PDLC",
            "aliases": [
                "igvf:corces_measurementSet_X028_G1_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS1524WKTN/",
            "accession": "IGVFDS1524WKTN",
            "aliases": [
                "igvf:corces_measurementSet_X028_G3_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS4780LCVB/",
            "accession": "IGVFDS4780LCVB",
            "aliases": [
                "igvf:corces_measurementSet_X028_G3_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS0501ORTA/",
            "accession": "IGVFDS0501ORTA",
            "aliases": [
                "igvf:corces_measurementSet_X028_G4_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS2675HBRY/",
            "accession": "IGVFDS2675HBRY",
            "aliases": [
                "igvf:corces_measurementSet_X028_G4_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS3858ZAQM/",
            "accession": "IGVFDS3858ZAQM",
            "aliases": [
                "igvf:corces_measurementSet_X028_G7_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS1013LBEZ/",
            "accession": "IGVFDS1013LBEZ",
            "aliases": [
                "igvf:corces_measurementSet_X028_G7_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS3718OSOX/",
            "accession": "IGVFDS3718OSOX",
            "aliases": [
                "igvf:corces_measurementSet_X028_G2_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS4319JYXA/",
            "accession": "IGVFDS4319JYXA",
            "aliases": [
                "igvf:corces_measurementSet_X028_G2_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS6930SNMF/",
            "accession": "IGVFDS6930SNMF",
            "aliases": [
                "igvf:corces_measurementSet_X028_G5_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS8552WQEE/",
            "accession": "IGVFDS8552WQEE",
            "aliases": [
                "igvf:corces_measurementSet_X028_G5_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS2315CNRX/",
            "accession": "IGVFDS2315CNRX",
            "aliases": [
                "igvf:corces_measurementSet_X028_G8_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS2256ZOZQ/",
            "accession": "IGVFDS2256ZOZQ",
            "aliases": [
                "igvf:corces_measurementSet_X028_G8_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS7362VJGH/",
            "accession": "IGVFDS7362VJGH",
            "aliases": [
                "igvf:corces_measurementSet_X028_G6_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS0953NSGI/",
            "accession": "IGVFDS0953NSGI",
            "aliases": [
                "igvf:corces_measurementSet_X028_G6_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS3035QFKU/",
            "accession": "IGVFDS3035QFKU",
            "aliases": [
                "igvf:corces_measurementSet_RP011_G8_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS6373YBDI/",
            "accession": "IGVFDS6373YBDI",
            "aliases": [
                "igvf:corces_measurementSet_RP011_G8_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS2229EHIM/",
            "accession": "IGVFDS2229EHIM",
            "aliases": [
                "igvf:corces_measurementSet_RP011_G1_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS3628MXUK/",
            "accession": "IGVFDS3628MXUK",
            "aliases": [
                "igvf:corces_measurementSet_RP011_G1_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS5362QJCF/",
            "accession": "IGVFDS5362QJCF",
            "aliases": [
                "igvf:corces_measurementSet_RP011_G3_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS1279DJVE/",
            "accession": "IGVFDS1279DJVE",
            "aliases": [
                "igvf:corces_measurementSet_RP011_G3_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS0856IUPF/",
            "accession": "IGVFDS0856IUPF",
            "aliases": [
                "igvf:corces_measurementSet_RP011_G6_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS8611TPMB/",
            "accession": "IGVFDS8611TPMB",
            "aliases": [
                "igvf:corces_measurementSet_RP011_G6_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS3484DNVB/",
            "accession": "IGVFDS3484DNVB",
            "aliases": [
                "igvf:corces_measurementSet_RP011_G5_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS3602NEYS/",
            "accession": "IGVFDS3602NEYS",
            "aliases": [
                "igvf:corces_measurementSet_RP011_G5_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS5146PTIC/",
            "accession": "IGVFDS5146PTIC",
            "aliases": [
                "igvf:corces_measurementSet_RP011_G7_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS2300TLPU/",
            "accession": "IGVFDS2300TLPU",
            "aliases": [
                "igvf:corces_measurementSet_RP011_G7_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS0831CAYJ/",
            "accession": "IGVFDS0831CAYJ",
            "aliases": [
                "igvf:corces_measurementSet_RP011_G4_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS4334WKOE/",
            "accession": "IGVFDS4334WKOE",
            "aliases": [
                "igvf:corces_measurementSet_RP011_G4_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS8666KHZN/",
            "accession": "IGVFDS8666KHZN",
            "aliases": [
                "igvf:corces_measurementSet_RP011_G2_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS7806UOQI/",
            "accession": "IGVFDS7806UOQI",
            "aliases": [
                "igvf:corces_measurementSet_RP011_G2_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        }
    ],
    "institutional_certificates": [
        {
            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
            "certificate_identifier": "IP115-05",
            "controlled_access": false,
            "status": "in progress"
        }
    ],
    "lab": {
        "@id": "/labs/ryan-corces/",
        "title": "Ryan Corces, Gladstone Institute UCSF"
    },
    "lower_bound_age": 80,
    "lower_bound_age_in_hours": 700800,
    "multiplexed_in": [
        {
            "@id": "/multiplexed-samples/IGVFSM6259JSXN/",
            "accession": "IGVFSM6259JSXN",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM7150ADFP/",
            "accession": "IGVFSM7150ADFP",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM4873ZKQI/",
            "accession": "IGVFSM4873ZKQI",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM2664KMPG/",
            "accession": "IGVFSM2664KMPG",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM1341HRWL/",
            "accession": "IGVFSM1341HRWL",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM4526FRYV/",
            "accession": "IGVFSM4526FRYV",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM8232WDCF/",
            "accession": "IGVFSM8232WDCF",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM9719AYTK/",
            "accession": "IGVFSM9719AYTK",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM3747QRCH/",
            "accession": "IGVFSM3747QRCH",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM4137SEKT/",
            "accession": "IGVFSM4137SEKT",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM0695RJYV/",
            "accession": "IGVFSM0695RJYV",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM6926MVZN/",
            "accession": "IGVFSM6926MVZN",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM0643EUKR/",
            "accession": "IGVFSM0643EUKR",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM5471WRIH/",
            "accession": "IGVFSM5471WRIH",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM9332LJBD/",
            "accession": "IGVFSM9332LJBD",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM9347ZBKI/",
            "accession": "IGVFSM9347ZBKI",
            "status": "preview"
        }
    ],
    "origin_of": [],
    "parts": [],
    "pmi": 156,
    "pmi_units": "minute",
    "pooled_in": [],
    "preservation_method": "flash-freezing",
    "protocols": [
        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
    ],
    "sample_terms": [
        {
            "@id": "/sample-terms/UBERON_0001874/",
            "status": "preview",
            "term_name": "putamen"
        }
    ],
    "schema_version": "21",
    "sex": "male",
    "sorted_fractions": [],
    "sources": [
        {
            "@id": "/sources/banner-health/",
            "status": "released",
            "title": "Banner Health"
        }
    ],
    "status": "preview",
    "submitted_by": {
        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
        "title": "Ryan Corces"
    },
    "summary": "Homo sapiens (male, 80 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment",
    "taxa": "Homo sapiens",
    "upper_bound_age": 80,
    "upper_bound_age_in_hours": 700800,
    "uuid": "90febf28-3f68-4343-b844-d6811d682875",
    "virtual": false
}