cerebellar cortex — IGVFSM2164SPSZ

1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM2164SPSZ/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM2164SPSZ",
11    "age": "79",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1632_CBL_B1"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing CCF ID",
20                "detail": "Tissue [IGVFSM2164SPSZ](/tissues/IGVFSM2164SPSZ/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_tissue_ccf_id",
24                "path": "/tissues/IGVFSM2164SPSZ/"
25            }
26        ]
27    },
28    "award": {
29        "@id": "/awards/HG012076/",
30        "component": "mapping"
31    },
32    "classifications": [
33        "tissue"
34    ],
35    "creation_timestamp": "2025-03-19T12:58:30.236430+00:00",
36    "date_obtained": "2023-03-15",
37    "donors": [
38        {
39            "@id": "/human-donors/IGVFDO5205IAEO/",
40            "accession": "IGVFDO5205IAEO",
41            "ethnicities": [
42                "European"
43            ],
44            "status": "preview"
45        }
46    ],
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53            ],
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55            "lab": {
56                "title": "Ryan Corces, Gladstone Institute UCSF"
57            },
58            "preferred_assay_title": "10x multiome",
59            "status": "preview",
60            "summary": "single-nucleus ATAC-seq (10x multiome)"
61        },
62        {
63            "@id": "/measurement-sets/IGVFDS6506DNXD/",
64            "accession": "IGVFDS6506DNXD",
65            "aliases": [
66                "igvf:corces_measurementSet_X044_G8_RNA"
67            ],
68            "file_set_type": "experimental data",
69            "lab": {
70                "title": "Ryan Corces, Gladstone Institute UCSF"
71            },
72            "preferred_assay_title": "10x multiome",
73            "status": "preview",
74            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
75        },
76        {
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78            "accession": "IGVFDS2538KOXA",
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80                "igvf:corces_measurementSet_X044_G7_ATAC"
81            ],
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83            "lab": {
84                "title": "Ryan Corces, Gladstone Institute UCSF"
85            },
86            "preferred_assay_title": "10x multiome",
87            "status": "preview",
88            "summary": "single-nucleus ATAC-seq (10x multiome)"
89        },
90        {
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93            "aliases": [
94                "igvf:corces_measurementSet_X044_G7_RNA"
95            ],
96            "file_set_type": "experimental data",
97            "lab": {
98                "title": "Ryan Corces, Gladstone Institute UCSF"
99            },
100            "preferred_assay_title": "10x multiome",
101            "status": "preview",
102            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
103        },
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111            "lab": {
112                "title": "Ryan Corces, Gladstone Institute UCSF"
113            },
114            "preferred_assay_title": "10x multiome",
115            "status": "preview",
116            "summary": "single-nucleus ATAC-seq (10x multiome)"
117        },
118        {
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120            "accession": "IGVFDS8295KFHG",
121            "aliases": [
122                "igvf:corces_measurementSet_X044_G1_RNA"
123            ],
124            "file_set_type": "experimental data",
125            "lab": {
126                "title": "Ryan Corces, Gladstone Institute UCSF"
127            },
128            "preferred_assay_title": "10x multiome",
129            "status": "preview",
130            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
131        },
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136                "igvf:corces_measurementSet_X044_G4_ATAC"
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139            "lab": {
140                "title": "Ryan Corces, Gladstone Institute UCSF"
141            },
142            "preferred_assay_title": "10x multiome",
143            "status": "preview",
144            "summary": "single-nucleus ATAC-seq (10x multiome)"
145        },
146        {
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150                "igvf:corces_measurementSet_X044_G4_RNA"
151            ],
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153            "lab": {
154                "title": "Ryan Corces, Gladstone Institute UCSF"
155            },
156            "preferred_assay_title": "10x multiome",
157            "status": "preview",
158            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
159        },
160        {
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162            "accession": "IGVFDS8318EODY",
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164                "igvf:corces_measurementSet_X044_G2_ATAC"
165            ],
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167            "lab": {
168                "title": "Ryan Corces, Gladstone Institute UCSF"
169            },
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171            "status": "preview",
172            "summary": "single-nucleus ATAC-seq (10x multiome)"
173        },
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179            ],
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181            "lab": {
182                "title": "Ryan Corces, Gladstone Institute UCSF"
183            },
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186            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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196                "title": "Ryan Corces, Gladstone Institute UCSF"
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199            "status": "preview",
200            "summary": "single-nucleus ATAC-seq (10x multiome)"
201        },
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206                "igvf:corces_measurementSet_X044_G3_RNA"
207            ],
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209            "lab": {
210                "title": "Ryan Corces, Gladstone Institute UCSF"
211            },
212            "preferred_assay_title": "10x multiome",
213            "status": "preview",
214            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
215        },
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218            "accession": "IGVFDS1841XXQV",
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220                "igvf:corces_measurementSet_X044_G5_ATAC"
221            ],
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223            "lab": {
224                "title": "Ryan Corces, Gladstone Institute UCSF"
225            },
226            "preferred_assay_title": "10x multiome",
227            "status": "preview",
228            "summary": "single-nucleus ATAC-seq (10x multiome)"
229        },
230        {
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238                "title": "Ryan Corces, Gladstone Institute UCSF"
239            },
240            "preferred_assay_title": "10x multiome",
241            "status": "preview",
242            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
243        },
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251            "lab": {
252                "title": "Ryan Corces, Gladstone Institute UCSF"
253            },
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255            "status": "preview",
256            "summary": "single-nucleus ATAC-seq (10x multiome)"
257        },
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265            "lab": {
266                "title": "Ryan Corces, Gladstone Institute UCSF"
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270            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
271        },
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280                "title": "Ryan Corces, Gladstone Institute UCSF"
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283            "status": "preview",
284            "summary": "single-nucleus ATAC-seq (10x multiome)"
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293            "lab": {
294                "title": "Ryan Corces, Gladstone Institute UCSF"
295            },
296            "preferred_assay_title": "10x multiome",
297            "status": "preview",
298            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
299        },
300        {
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307            "lab": {
308                "title": "Ryan Corces, Gladstone Institute UCSF"
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311            "status": "preview",
312            "summary": "single-nucleus ATAC-seq (10x multiome)"
313        },
314        {
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321            "lab": {
322                "title": "Ryan Corces, Gladstone Institute UCSF"
323            },
324            "preferred_assay_title": "10x multiome",
325            "status": "preview",
326            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
327        },
328        {
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330            "accession": "IGVFDS1686QXQO",
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333            ],
334            "file_set_type": "experimental data",
335            "lab": {
336                "title": "Ryan Corces, Gladstone Institute UCSF"
337            },
338            "preferred_assay_title": "10x multiome",
339            "status": "preview",
340            "summary": "single-nucleus ATAC-seq (10x multiome)"
341        },
342        {
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349            "lab": {
350                "title": "Ryan Corces, Gladstone Institute UCSF"
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354            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
355        },
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364                "title": "Ryan Corces, Gladstone Institute UCSF"
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367            "status": "preview",
368            "summary": "single-nucleus ATAC-seq (10x multiome)"
369        },
370        {
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377            "lab": {
378                "title": "Ryan Corces, Gladstone Institute UCSF"
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380            "preferred_assay_title": "10x multiome",
381            "status": "preview",
382            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
383        },
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391            "lab": {
392                "title": "Ryan Corces, Gladstone Institute UCSF"
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395            "status": "preview",
396            "summary": "single-nucleus ATAC-seq (10x multiome)"
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405            "lab": {
406                "title": "Ryan Corces, Gladstone Institute UCSF"
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420                "title": "Ryan Corces, Gladstone Institute UCSF"
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424            "summary": "single-nucleus ATAC-seq (10x multiome)"
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433            "lab": {
434                "title": "Ryan Corces, Gladstone Institute UCSF"
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452            "summary": "single-nucleus ATAC-seq (10x multiome)"
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461            "lab": {
462                "title": "Ryan Corces, Gladstone Institute UCSF"
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465            "status": "preview",
466            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
467        },
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475            "lab": {
476                "title": "Ryan Corces, Gladstone Institute UCSF"
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479            "status": "preview",
480            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
481        },
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489            "lab": {
490                "title": "Ryan Corces, Gladstone Institute UCSF"
491            },
492            "preferred_assay_title": "10x multiome",
493            "status": "preview",
494            "summary": "single-nucleus ATAC-seq (10x multiome)"
495        }
496    ],
497    "institutional_certificates": [
498        {
499            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
500            "certificate_identifier": "IP115-05",
501            "controlled_access": false,
502            "status": "in progress"
503        }
504    ],
505    "lab": {
506        "@id": "/labs/ryan-corces/",
507        "title": "Ryan Corces, Gladstone Institute UCSF"
508    },
509    "lower_bound_age": 79,
510    "lower_bound_age_in_hours": 692040,
511    "multiplexed_in": [
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513            "@id": "/multiplexed-samples/IGVFSM3090RRWU/",
514            "accession": "IGVFSM3090RRWU",
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520            "status": "preview"
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537        {
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539            "accession": "IGVFSM7680WXDX",
540            "status": "preview"
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545            "status": "preview"
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547        {
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549            "accession": "IGVFSM3425YHKS",
550            "status": "preview"
551        },
552        {
553            "@id": "/multiplexed-samples/IGVFSM3226MLFV/",
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555            "status": "preview"
556        },
557        {
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559            "accession": "IGVFSM5046SGAL",
560            "status": "preview"
561        },
562        {
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564            "accession": "IGVFSM9167CXIN",
565            "status": "preview"
566        },
567        {
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569            "accession": "IGVFSM1205XBBX",
570            "status": "preview"
571        },
572        {
573            "@id": "/multiplexed-samples/IGVFSM6267UURV/",
574            "accession": "IGVFSM6267UURV",
575            "status": "preview"
576        },
577        {
578            "@id": "/multiplexed-samples/IGVFSM3122KACM/",
579            "accession": "IGVFSM3122KACM",
580            "status": "preview"
581        },
582        {
583            "@id": "/multiplexed-samples/IGVFSM9610QWFB/",
584            "accession": "IGVFSM9610QWFB",
585            "status": "preview"
586        },
587        {
588            "@id": "/multiplexed-samples/IGVFSM0752KTLR/",
589            "accession": "IGVFSM0752KTLR",
590            "status": "preview"
591        }
592    ],
593    "origin_of": [],
594    "part_of": "/tissues/IGVFSM9680YRHS/",
595    "parts": [],
596    "pmi": 258,
597    "pmi_units": "minute",
598    "pooled_in": [],
599    "preservation_method": "flash-freezing",
600    "protocols": [
601        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
602    ],
603    "sample_terms": [
604        {
605            "@id": "/sample-terms/UBERON_0002129/",
606            "status": "preview",
607            "term_name": "cerebellar cortex"
608        }
609    ],
610    "schema_version": "21",
611    "sex": "male",
612    "sorted_fractions": [],
613    "sources": [
614        {
615            "@id": "/sources/banner-health/",
616            "status": "released",
617            "title": "Banner Health"
618        }
619    ],
620    "status": "preview",
621    "submitted_by": {
622        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
623        "title": "Ryan Corces"
624    },
625    "summary": "Homo sapiens (male, 79 years) cerebellar cortex tissue",
626    "taxa": "Homo sapiens",
627    "upper_bound_age": 79,
628    "upper_bound_age_in_hours": 692040,
629    "uuid": "67c3f743-fd6d-47eb-a779-9b552c06e6a5",
630    "virtual": false
631}