{
"@context": "/terms/",
"@id": "/tissues/IGVFSM2125HCJZ/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2125HCJZ",
"age": "81",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN1814_MTG"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM2125HCJZ](/tissues/IGVFSM2125HCJZ/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM2125HCJZ/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM2125HCJZ](/tissues/IGVFSM2125HCJZ/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM2125HCJZ/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T04:08:43.392913+00:00",
"date_obtained": "2022-10-26",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO6316TGCK/",
"accession": "IGVFDO6316TGCK",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS9856KSFL/",
"accession": "IGVFDS9856KSFL",
"aliases": [
"igvf:corces_measurementSet_X011_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7974SGAW/",
"accession": "IGVFDS7974SGAW",
"aliases": [
"igvf:corces_measurementSet_X011_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5147BCQQ/",
"accession": "IGVFDS5147BCQQ",
"aliases": [
"igvf:corces_measurementSet_X011_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2780CUNN/",
"accession": "IGVFDS2780CUNN",
"aliases": [
"igvf:corces_measurementSet_X011_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3574OBXA/",
"accession": "IGVFDS3574OBXA",
"aliases": [
"igvf:corces_measurementSet_X011_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0757WPDW/",
"accession": "IGVFDS0757WPDW",
"aliases": [
"igvf:corces_measurementSet_X011_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4787OAAL/",
"accession": "IGVFDS4787OAAL",
"aliases": [
"igvf:corces_measurementSet_X011_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3624ENHA/",
"accession": "IGVFDS3624ENHA",
"aliases": [
"igvf:corces_measurementSet_X011_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8701PRHG/",
"accession": "IGVFDS8701PRHG",
"aliases": [
"igvf:corces_measurementSet_X011_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1577AGYT/",
"accession": "IGVFDS1577AGYT",
"aliases": [
"igvf:corces_measurementSet_X011_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9172VPNJ/",
"accession": "IGVFDS9172VPNJ",
"aliases": [
"igvf:corces_measurementSet_X011_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4492HFNG/",
"accession": "IGVFDS4492HFNG",
"aliases": [
"igvf:corces_measurementSet_X011_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5983CJIL/",
"accession": "IGVFDS5983CJIL",
"aliases": [
"igvf:corces_measurementSet_X011_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0260KTWD/",
"accession": "IGVFDS0260KTWD",
"aliases": [
"igvf:corces_measurementSet_X011_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2614NLMV/",
"accession": "IGVFDS2614NLMV",
"aliases": [
"igvf:corces_measurementSet_X011_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2570NJYN/",
"accession": "IGVFDS2570NJYN",
"aliases": [
"igvf:corces_measurementSet_X011_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4482JTLK/",
"accession": "IGVFDS4482JTLK",
"aliases": [
"igvf:corces_measurementSet_RP021_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9248YEGX/",
"accession": "IGVFDS9248YEGX",
"aliases": [
"igvf:corces_measurementSet_RP021_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8030DHLN/",
"accession": "IGVFDS8030DHLN",
"aliases": [
"igvf:corces_measurementSet_RP021_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6017DONZ/",
"accession": "IGVFDS6017DONZ",
"aliases": [
"igvf:corces_measurementSet_RP021_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8445THOS/",
"accession": "IGVFDS8445THOS",
"aliases": [
"igvf:corces_measurementSet_RP021_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6950EWLX/",
"accession": "IGVFDS6950EWLX",
"aliases": [
"igvf:corces_measurementSet_RP021_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0829QLBI/",
"accession": "IGVFDS0829QLBI",
"aliases": [
"igvf:corces_measurementSet_RP021_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7453IBHQ/",
"accession": "IGVFDS7453IBHQ",
"aliases": [
"igvf:corces_measurementSet_RP021_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8175EHCI/",
"accession": "IGVFDS8175EHCI",
"aliases": [
"igvf:corces_measurementSet_RP021_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1245GYAG/",
"accession": "IGVFDS1245GYAG",
"aliases": [
"igvf:corces_measurementSet_RP021_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9871NUDC/",
"accession": "IGVFDS9871NUDC",
"aliases": [
"igvf:corces_measurementSet_RP021_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1354SHUU/",
"accession": "IGVFDS1354SHUU",
"aliases": [
"igvf:corces_measurementSet_RP021_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 81,
"lower_bound_age_in_hours": 709560,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM5882JKZW/",
"accession": "IGVFSM5882JKZW",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7267WQUO/",
"accession": "IGVFSM7267WQUO",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6849SXMF/",
"accession": "IGVFSM6849SXMF",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2813DTEQ/",
"accession": "IGVFSM2813DTEQ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4167YYTO/",
"accession": "IGVFSM4167YYTO",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9406XGBM/",
"accession": "IGVFSM9406XGBM",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4704XJJH/",
"accession": "IGVFSM4704XJJH",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4940CSDA/",
"accession": "IGVFSM4940CSDA",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2242CVZD/",
"accession": "IGVFSM2242CVZD",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3191ZJBV/",
"accession": "IGVFSM3191ZJBV",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6537ROKX/",
"accession": "IGVFSM6537ROKX",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8178OHJY/",
"accession": "IGVFSM8178OHJY",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0973MXCP/",
"accession": "IGVFSM0973MXCP",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0125OEIT/",
"accession": "IGVFSM0125OEIT",
"status": "preview"
}
],
"origin_of": [],
"parts": [],
"pmi": 295,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 81 years) middle temporal gyrus tissue associated with Parkinson's disease",
"taxa": "Homo sapiens",
"upper_bound_age": 81,
"upper_bound_age_in_hours": 709560,
"uuid": "f46e2360-3248-41f3-9935-593d9e8cc3d9",
"virtual": false
}