posterior cingulate gyrus — IGVFSM2024ZZAE

preview
1{
2    "@context": "/terms/",
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4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
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11    "age": "90 or above",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN0912_CING"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM2024ZZAE](/tissues/IGVFSM2024ZZAE/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM2024ZZAE/"
25            },
26            {
27                "category": "mismatched status",
28                "detail": "Preview tissue [IGVFSM2024ZZAE](/tissues/IGVFSM2024ZZAE/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_item_status",
32                "path": "/tissues/IGVFSM2024ZZAE/"
33            },
34            {
35                "category": "missing CCF ID",
36                "detail": "Tissue [IGVFSM2024ZZAE](/tissues/IGVFSM2024ZZAE/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
37                "level": 30,
38                "level_name": "INTERNAL_ACTION",
39                "name": "audit_tissue_ccf_id",
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41            }
42        ]
43    },
44    "award": {
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46        "component": "mapping"
47    },
48    "classifications": [
49        "tissue"
50    ],
51    "creation_timestamp": "2025-03-19T04:11:54.981290+00:00",
52    "date_obtained": "2023-01-18",
53    "disease_terms": [
54        {
55            "@id": "/phenotype-terms/DOID_14330/",
56            "status": "in progress",
57            "term_name": "Parkinson's disease"
58        },
59        {
60            "@id": "/phenotype-terms/DOID_9246/",
61            "status": "in progress",
62            "term_name": "cerebral amyloid angiopathy"
63        }
64    ],
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238                "title": "Ryan Corces, Gladstone Institute UCSF"
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621        },
622        {
623            "@id": "/measurement-sets/IGVFDS8301QKXZ/",
624            "accession": "IGVFDS8301QKXZ",
625            "aliases": [
626                "igvf:corces_measurementSet_RP031_G4_RNA"
627            ],
628            "file_set_type": "experimental data",
629            "lab": {
630                "title": "Ryan Corces, Gladstone Institute UCSF"
631            },
632            "preferred_assay_title": "10x multiome",
633            "status": "preview",
634            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
635        },
636        {
637            "@id": "/measurement-sets/IGVFDS1748RGNP/",
638            "accession": "IGVFDS1748RGNP",
639            "aliases": [
640                "igvf:corces_measurementSet_RP031_G1_ATAC"
641            ],
642            "file_set_type": "experimental data",
643            "lab": {
644                "title": "Ryan Corces, Gladstone Institute UCSF"
645            },
646            "preferred_assay_title": "10x multiome",
647            "status": "preview",
648            "summary": "single-nucleus ATAC-seq (10x multiome)"
649        },
650        {
651            "@id": "/measurement-sets/IGVFDS2154EKES/",
652            "accession": "IGVFDS2154EKES",
653            "aliases": [
654                "igvf:corces_measurementSet_RP031_G1_RNA"
655            ],
656            "file_set_type": "experimental data",
657            "lab": {
658                "title": "Ryan Corces, Gladstone Institute UCSF"
659            },
660            "preferred_assay_title": "10x multiome",
661            "status": "preview",
662            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
663        },
664        {
665            "@id": "/measurement-sets/IGVFDS7601MJZI/",
666            "accession": "IGVFDS7601MJZI",
667            "aliases": [
668                "igvf:corces_measurementSet_RP031_G8_ATAC"
669            ],
670            "file_set_type": "experimental data",
671            "lab": {
672                "title": "Ryan Corces, Gladstone Institute UCSF"
673            },
674            "preferred_assay_title": "10x multiome",
675            "status": "preview",
676            "summary": "single-nucleus ATAC-seq (10x multiome)"
677        },
678        {
679            "@id": "/measurement-sets/IGVFDS5005PQPM/",
680            "accession": "IGVFDS5005PQPM",
681            "aliases": [
682                "igvf:corces_measurementSet_RP031_G8_RNA"
683            ],
684            "file_set_type": "experimental data",
685            "lab": {
686                "title": "Ryan Corces, Gladstone Institute UCSF"
687            },
688            "preferred_assay_title": "10x multiome",
689            "status": "preview",
690            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
691        },
692        {
693            "@id": "/measurement-sets/IGVFDS3438BBIZ/",
694            "accession": "IGVFDS3438BBIZ",
695            "aliases": [
696                "igvf:corces_measurementSet_RP031_G3_RNA"
697            ],
698            "file_set_type": "experimental data",
699            "lab": {
700                "title": "Ryan Corces, Gladstone Institute UCSF"
701            },
702            "preferred_assay_title": "10x multiome",
703            "status": "preview",
704            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
705        },
706        {
707            "@id": "/measurement-sets/IGVFDS1602DOZK/",
708            "accession": "IGVFDS1602DOZK",
709            "aliases": [
710                "igvf:corces_measurementSet_RP031_G3_ATAC"
711            ],
712            "file_set_type": "experimental data",
713            "lab": {
714                "title": "Ryan Corces, Gladstone Institute UCSF"
715            },
716            "preferred_assay_title": "10x multiome",
717            "status": "preview",
718            "summary": "single-nucleus ATAC-seq (10x multiome)"
719        },
720        {
721            "@id": "/measurement-sets/IGVFDS9832WUNH/",
722            "accession": "IGVFDS9832WUNH",
723            "aliases": [
724                "igvf:corces_measurementSet_RP031_G7_ATAC"
725            ],
726            "file_set_type": "experimental data",
727            "lab": {
728                "title": "Ryan Corces, Gladstone Institute UCSF"
729            },
730            "preferred_assay_title": "10x multiome",
731            "status": "preview",
732            "summary": "single-nucleus ATAC-seq (10x multiome)"
733        },
734        {
735            "@id": "/measurement-sets/IGVFDS6958IETF/",
736            "accession": "IGVFDS6958IETF",
737            "aliases": [
738                "igvf:corces_measurementSet_RP031_G7_RNA"
739            ],
740            "file_set_type": "experimental data",
741            "lab": {
742                "title": "Ryan Corces, Gladstone Institute UCSF"
743            },
744            "preferred_assay_title": "10x multiome",
745            "status": "preview",
746            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
747        }
748    ],
749    "institutional_certificates": [
750        {
751            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
752            "certificate_identifier": "IP115-05",
753            "controlled_access": false,
754            "status": "in progress"
755        }
756    ],
757    "lab": {
758        "@id": "/labs/ryan-corces/",
759        "title": "Ryan Corces, Gladstone Institute UCSF"
760    },
761    "lower_bound_age": 90,
762    "lower_bound_age_in_hours": 788400,
763    "multiplexed_in": [
764        {
765            "@id": "/multiplexed-samples/IGVFSM3013AHXL/",
766            "accession": "IGVFSM3013AHXL",
767            "status": "preview"
768        },
769        {
770            "@id": "/multiplexed-samples/IGVFSM8186WTLH/",
771            "accession": "IGVFSM8186WTLH",
772            "status": "preview"
773        },
774        {
775            "@id": "/multiplexed-samples/IGVFSM7778OPXA/",
776            "accession": "IGVFSM7778OPXA",
777            "status": "preview"
778        },
779        {
780            "@id": "/multiplexed-samples/IGVFSM9062CRHH/",
781            "accession": "IGVFSM9062CRHH",
782            "status": "preview"
783        },
784        {
785            "@id": "/multiplexed-samples/IGVFSM9119FXQL/",
786            "accession": "IGVFSM9119FXQL",
787            "status": "preview"
788        },
789        {
790            "@id": "/multiplexed-samples/IGVFSM2386YVCC/",
791            "accession": "IGVFSM2386YVCC",
792            "status": "preview"
793        },
794        {
795            "@id": "/multiplexed-samples/IGVFSM3632SNXG/",
796            "accession": "IGVFSM3632SNXG",
797            "status": "preview"
798        },
799        {
800            "@id": "/multiplexed-samples/IGVFSM6160TIJC/",
801            "accession": "IGVFSM6160TIJC",
802            "status": "preview"
803        },
804        {
805            "@id": "/multiplexed-samples/IGVFSM8981GXZB/",
806            "accession": "IGVFSM8981GXZB",
807            "status": "preview"
808        },
809        {
810            "@id": "/multiplexed-samples/IGVFSM2055PXMF/",
811            "accession": "IGVFSM2055PXMF",
812            "status": "preview"
813        },
814        {
815            "@id": "/multiplexed-samples/IGVFSM5451ZFAE/",
816            "accession": "IGVFSM5451ZFAE",
817            "status": "preview"
818        },
819        {
820            "@id": "/multiplexed-samples/IGVFSM3126EQPY/",
821            "accession": "IGVFSM3126EQPY",
822            "status": "preview"
823        },
824        {
825            "@id": "/multiplexed-samples/IGVFSM9956HBLE/",
826            "accession": "IGVFSM9956HBLE",
827            "status": "preview"
828        },
829        {
830            "@id": "/multiplexed-samples/IGVFSM7086NABQ/",
831            "accession": "IGVFSM7086NABQ",
832            "status": "preview"
833        },
834        {
835            "@id": "/multiplexed-samples/IGVFSM8749HWYK/",
836            "accession": "IGVFSM8749HWYK",
837            "status": "preview"
838        },
839        {
840            "@id": "/multiplexed-samples/IGVFSM6509YCTF/",
841            "accession": "IGVFSM6509YCTF",
842            "status": "preview"
843        },
844        {
845            "@id": "/multiplexed-samples/IGVFSM2759HMOI/",
846            "accession": "IGVFSM2759HMOI",
847            "status": "preview"
848        },
849        {
850            "@id": "/multiplexed-samples/IGVFSM2932RFCB/",
851            "accession": "IGVFSM2932RFCB",
852            "status": "preview"
853        },
854        {
855            "@id": "/multiplexed-samples/IGVFSM5709CORH/",
856            "accession": "IGVFSM5709CORH",
857            "status": "preview"
858        },
859        {
860            "@id": "/multiplexed-samples/IGVFSM1595JOHE/",
861            "accession": "IGVFSM1595JOHE",
862            "status": "preview"
863        },
864        {
865            "@id": "/multiplexed-samples/IGVFSM6328YMOY/",
866            "accession": "IGVFSM6328YMOY",
867            "status": "preview"
868        },
869        {
870            "@id": "/multiplexed-samples/IGVFSM9971ETBE/",
871            "accession": "IGVFSM9971ETBE",
872            "status": "preview"
873        },
874        {
875            "@id": "/multiplexed-samples/IGVFSM7198HQDQ/",
876            "accession": "IGVFSM7198HQDQ",
877            "status": "preview"
878        },
879        {
880            "@id": "/multiplexed-samples/IGVFSM0980JQZM/",
881            "accession": "IGVFSM0980JQZM",
882            "status": "preview"
883        }
884    ],
885    "origin_of": [],
886    "parts": [],
887    "pmi": 165,
888    "pmi_units": "minute",
889    "pooled_in": [],
890    "preservation_method": "flash-freezing",
891    "protocols": [
892        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
893    ],
894    "sample_terms": [
895        {
896            "@id": "/sample-terms/UBERON_0002740/",
897            "status": "preview",
898            "term_name": "posterior cingulate gyrus"
899        }
900    ],
901    "schema_version": "21",
902    "sex": "male",
903    "sorted_fractions": [],
904    "sources": [
905        {
906            "@id": "/sources/banner-health/",
907            "status": "released",
908            "title": "Banner Health"
909        }
910    ],
911    "status": "preview",
912    "submitted_by": {
913        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
914        "title": "Ryan Corces"
915    },
916    "summary": "Homo sapiens (male, 90 or above years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy",
917    "taxa": "Homo sapiens",
918    "upper_bound_age": 90,
919    "upper_bound_age_in_hours": 788400,
920    "uuid": "93400183-76a5-4d6a-ad6a-2875db1d31b3",
921    "virtual": false
922}