gastrocnemius — IGVFSM1961UWLF

released
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM1961UWLF/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM1961UWLF",
11    "age": "70",
12    "age_units": "day",
13    "aliases": [
14        "ali-mortazavi:122_B6J_10F_16_UBERON_0001388"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing publication",
20                "detail": "Tissue [IGVFSM1961UWLF](/tissues/IGVFSM1961UWLF/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_sample_missing_publication",
24                "path": "/tissues/IGVFSM1961UWLF/"
25            }
26        ]
27    },
28    "award": {
29        "@id": "/awards/HG012077/",
30        "component": "mapping"
31    },
32    "classifications": [
33        "tissue"
34    ],
35    "creation_timestamp": "2023-10-18T23:33:33.565309+00:00",
36    "donors": [
37        {
38            "@id": "/rodent-donors/IGVFDO7658MAGX/",
39            "accession": "IGVFDO7658MAGX",
40            "status": "released",
41            "strain": "C57BL/6J"
42        }
43    ],
44    "file_sets": [
45        {
46            "@id": "/measurement-sets/IGVFDS5512NECU/",
47            "accession": "IGVFDS5512NECU",
48            "aliases": [
49                "ali-mortazavi:012_13B_illumina"
50            ],
51            "file_set_type": "experimental data",
52            "lab": {
53                "title": "Ali Mortazavi, UCI"
54            },
55            "preferred_assay_title": "Parse SPLiT-seq",
56            "status": "released",
57            "summary": "Parse SPLiT-seq"
58        },
59        {
60            "@id": "/analysis-sets/IGVFDS0108MUVF/",
61            "accession": "IGVFDS0108MUVF",
62            "aliases": [
63                "ali-mortazavi:igvf_012_Subpool_2_total+core"
64            ],
65            "file_set_type": "intermediate analysis",
66            "lab": {
67                "title": "Ali Mortazavi, UCI"
68            },
69            "status": "released",
70            "summary": "Parse SPLiT-seq: sparse gene count matrix"
71        },
72        {
73            "@id": "/analysis-sets/IGVFDS8997QHCM/",
74            "accession": "IGVFDS8997QHCM",
75            "aliases": [
76                "ali-mortazavi:founder_adrenal_analysis"
77            ],
78            "file_set_type": "principal analysis",
79            "lab": {
80                "title": "Ali Mortazavi, UCI"
81            },
82            "status": "released",
83            "summary": "Parse SPLiT-seq: sparse gene count matrix"
84        },
85        {
86            "@id": "/analysis-sets/IGVFDS2950ZMLN/",
87            "accession": "IGVFDS2950ZMLN",
88            "aliases": [
89                "ali-mortazavi:founder_cortexhippocampus_analysis"
90            ],
91            "file_set_type": "principal analysis",
92            "lab": {
93                "title": "Ali Mortazavi, UCI"
94            },
95            "status": "released",
96            "summary": "Parse SPLiT-seq: sparse gene count matrix"
97        },
98        {
99            "@id": "/analysis-sets/IGVFDS1666GZSV/",
100            "accession": "IGVFDS1666GZSV",
101            "aliases": [
102                "ali-mortazavi:founder_diencephalonpituitary_analysis"
103            ],
104            "file_set_type": "principal analysis",
105            "lab": {
106                "title": "Ali Mortazavi, UCI"
107            },
108            "status": "released",
109            "summary": "Parse SPLiT-seq: sparse gene count matrix"
110        },
111        {
112            "@id": "/analysis-sets/IGVFDS9423ZPAY/",
113            "accession": "IGVFDS9423ZPAY",
114            "aliases": [
115                "ali-mortazavi:founder_gastrocnemius_analysis"
116            ],
117            "file_set_type": "principal analysis",
118            "lab": {
119                "title": "Ali Mortazavi, UCI"
120            },
121            "status": "released",
122            "summary": "Parse SPLiT-seq: sparse gene count matrix"
123        },
124        {
125            "@id": "/analysis-sets/IGVFDS0868APKJ/",
126            "accession": "IGVFDS0868APKJ",
127            "aliases": [
128                "ali-mortazavi:founder_heart_analysis"
129            ],
130            "file_set_type": "principal analysis",
131            "lab": {
132                "title": "Ali Mortazavi, UCI"
133            },
134            "status": "released",
135            "summary": "Parse SPLiT-seq: sparse gene count matrix"
136        },
137        {
138            "@id": "/measurement-sets/IGVFDS7630FUMT/",
139            "accession": "IGVFDS7630FUMT",
140            "aliases": [
141                "ali-mortazavi:012_13C_illumina"
142            ],
143            "file_set_type": "experimental data",
144            "lab": {
145                "title": "Ali Mortazavi, UCI"
146            },
147            "preferred_assay_title": "Parse SPLiT-seq",
148            "status": "released",
149            "summary": "Parse SPLiT-seq"
150        },
151        {
152            "@id": "/analysis-sets/IGVFDS0314XOTU/",
153            "accession": "IGVFDS0314XOTU",
154            "aliases": [
155                "ali-mortazavi:igvf_012_Subpool_3_total+core"
156            ],
157            "file_set_type": "intermediate analysis",
158            "lab": {
159                "title": "Ali Mortazavi, UCI"
160            },
161            "status": "released",
162            "summary": "Parse SPLiT-seq: sparse gene count matrix"
163        },
164        {
165            "@id": "/measurement-sets/IGVFDS5939OGHF/",
166            "accession": "IGVFDS5939OGHF",
167            "aliases": [
168                "ali-mortazavi:012_13G_illumina"
169            ],
170            "file_set_type": "experimental data",
171            "lab": {
172                "title": "Ali Mortazavi, UCI"
173            },
174            "preferred_assay_title": "Parse SPLiT-seq",
175            "status": "released",
176            "summary": "Parse SPLiT-seq"
177        },
178        {
179            "@id": "/analysis-sets/IGVFDS5380YBJA/",
180            "accession": "IGVFDS5380YBJA",
181            "aliases": [
182                "ali-mortazavi:igvf_012_Subpool_7_total+core"
183            ],
184            "file_set_type": "intermediate analysis",
185            "lab": {
186                "title": "Ali Mortazavi, UCI"
187            },
188            "status": "released",
189            "summary": "Parse SPLiT-seq: sparse gene count matrix"
190        },
191        {
192            "@id": "/measurement-sets/IGVFDS1381GERK/",
193            "accession": "IGVFDS1381GERK",
194            "aliases": [
195                "ali-mortazavi:012_13H_illumina"
196            ],
197            "file_set_type": "experimental data",
198            "lab": {
199                "title": "Ali Mortazavi, UCI"
200            },
201            "preferred_assay_title": "Parse SPLiT-seq",
202            "status": "released",
203            "summary": "Parse SPLiT-seq"
204        },
205        {
206            "@id": "/analysis-sets/IGVFDS2966EFNN/",
207            "accession": "IGVFDS2966EFNN",
208            "aliases": [
209                "ali-mortazavi:igvf_012_Subpool_8_total+core"
210            ],
211            "file_set_type": "intermediate analysis",
212            "lab": {
213                "title": "Ali Mortazavi, UCI"
214            },
215            "status": "released",
216            "summary": "Parse SPLiT-seq: sparse gene count matrix"
217        },
218        {
219            "@id": "/measurement-sets/IGVFDS3302FHKC/",
220            "accession": "IGVFDS3302FHKC",
221            "aliases": [
222                "ali-mortazavi:012_13D_illumina"
223            ],
224            "file_set_type": "experimental data",
225            "lab": {
226                "title": "Ali Mortazavi, UCI"
227            },
228            "preferred_assay_title": "Parse SPLiT-seq",
229            "status": "released",
230            "summary": "Parse SPLiT-seq"
231        },
232        {
233            "@id": "/analysis-sets/IGVFDS7915RASL/",
234            "accession": "IGVFDS7915RASL",
235            "aliases": [
236                "ali-mortazavi:igvf_012_Subpool_4_total+core"
237            ],
238            "file_set_type": "intermediate analysis",
239            "lab": {
240                "title": "Ali Mortazavi, UCI"
241            },
242            "status": "released",
243            "summary": "Parse SPLiT-seq: sparse gene count matrix"
244        },
245        {
246            "@id": "/measurement-sets/IGVFDS6102WMDF/",
247            "accession": "IGVFDS6102WMDF",
248            "aliases": [
249                "ali-mortazavi:012_13A_illumina"
250            ],
251            "file_set_type": "experimental data",
252            "lab": {
253                "title": "Ali Mortazavi, UCI"
254            },
255            "preferred_assay_title": "Parse SPLiT-seq",
256            "status": "released",
257            "summary": "Parse SPLiT-seq"
258        },
259        {
260            "@id": "/analysis-sets/IGVFDS4493MGSZ/",
261            "accession": "IGVFDS4493MGSZ",
262            "aliases": [
263                "ali-mortazavi:igvf_012_Subpool_1_total+core"
264            ],
265            "file_set_type": "intermediate analysis",
266            "lab": {
267                "title": "Ali Mortazavi, UCI"
268            },
269            "status": "released",
270            "summary": "Parse SPLiT-seq: sparse gene count matrix"
271        },
272        {
273            "@id": "/measurement-sets/IGVFDS9962UVBO/",
274            "accession": "IGVFDS9962UVBO",
275            "aliases": [
276                "ali-mortazavi:012_13E_illumina"
277            ],
278            "file_set_type": "experimental data",
279            "lab": {
280                "title": "Ali Mortazavi, UCI"
281            },
282            "preferred_assay_title": "Parse SPLiT-seq",
283            "status": "released",
284            "summary": "Parse SPLiT-seq"
285        },
286        {
287            "@id": "/analysis-sets/IGVFDS0074LRVV/",
288            "accession": "IGVFDS0074LRVV",
289            "aliases": [
290                "ali-mortazavi:igvf_012_Subpool_5_total+core"
291            ],
292            "file_set_type": "intermediate analysis",
293            "lab": {
294                "title": "Ali Mortazavi, UCI"
295            },
296            "status": "released",
297            "summary": "Parse SPLiT-seq: sparse gene count matrix"
298        },
299        {
300            "@id": "/measurement-sets/IGVFDS6345NYTC/",
301            "accession": "IGVFDS6345NYTC",
302            "aliases": [
303                "ali-mortazavi:012_13F_illumina"
304            ],
305            "file_set_type": "experimental data",
306            "lab": {
307                "title": "Ali Mortazavi, UCI"
308            },
309            "preferred_assay_title": "Parse SPLiT-seq",
310            "status": "released",
311            "summary": "Parse SPLiT-seq"
312        },
313        {
314            "@id": "/analysis-sets/IGVFDS2302XZWV/",
315            "accession": "IGVFDS2302XZWV",
316            "aliases": [
317                "ali-mortazavi:igvf_012_Subpool_6_total+core"
318            ],
319            "file_set_type": "intermediate analysis",
320            "lab": {
321                "title": "Ali Mortazavi, UCI"
322            },
323            "status": "released",
324            "summary": "Parse SPLiT-seq: sparse gene count matrix"
325        }
326    ],
327    "institutional_certificates": [],
328    "lab": {
329        "@id": "/labs/ali-mortazavi/",
330        "title": "Ali Mortazavi, UCI"
331    },
332    "lower_bound_age": 70,
333    "lower_bound_age_in_hours": 1680,
334    "multiplexed_in": [
335        {
336            "@id": "/multiplexed-samples/IGVFSM7381DIEN/",
337            "accession": "IGVFSM7381DIEN",
338            "status": "released"
339        },
340        {
341            "@id": "/multiplexed-samples/IGVFSM7382DPJV/",
342            "accession": "IGVFSM7382DPJV",
343            "status": "released"
344        },
345        {
346            "@id": "/multiplexed-samples/IGVFSM7258KMGW/",
347            "accession": "IGVFSM7258KMGW",
348            "status": "released"
349        },
350        {
351            "@id": "/multiplexed-samples/IGVFSM7128PWFB/",
352            "accession": "IGVFSM7128PWFB",
353            "status": "released"
354        },
355        {
356            "@id": "/multiplexed-samples/IGVFSM0939WGPD/",
357            "accession": "IGVFSM0939WGPD",
358            "status": "released"
359        },
360        {
361            "@id": "/multiplexed-samples/IGVFSM8579RFZL/",
362            "accession": "IGVFSM8579RFZL",
363            "status": "released"
364        },
365        {
366            "@id": "/multiplexed-samples/IGVFSM7405FLWQ/",
367            "accession": "IGVFSM7405FLWQ",
368            "status": "released"
369        },
370        {
371            "@id": "/multiplexed-samples/IGVFSM4235CNOB/",
372            "accession": "IGVFSM4235CNOB",
373            "status": "released"
374        }
375    ],
376    "origin_of": [],
377    "parts": [],
378    "pooled_in": [],
379    "release_timestamp": "2025-04-19T01:55:33.398314+00:00",
380    "sample_terms": [
381        {
382            "@id": "/sample-terms/UBERON_0001388/",
383            "status": "released",
384            "term_name": "gastrocnemius"
385        }
386    ],
387    "schema_version": "21",
388    "sex": "female",
389    "sorted_fractions": [],
390    "sources": [
391        {
392            "@id": "/sources/jackson-labs/",
393            "status": "released",
394            "title": "The Jackson Laboratory"
395        }
396    ],
397    "status": "released",
398    "submitted_by": {
399        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
400        "title": "Diane Trout"
401    },
402    "summary": "Mus musculus C57BL/6J (female, 70 days) gastrocnemius tissue",
403    "taxa": "Mus musculus",
404    "upper_bound_age": 70,
405    "upper_bound_age_in_hours": 1680,
406    "uuid": "184c3f95-9f90-43a8-9d4d-2a5286d30cd3",
407    "virtual": false
408}