{
"@context": "/terms/",
"@id": "/tissues/IGVFSM1905IFKY/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1905IFKY",
"age": "82",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN0437_PUT"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM1905IFKY](/tissues/IGVFSM1905IFKY/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM1905IFKY/"
},
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM1905IFKY](/tissues/IGVFSM1905IFKY/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM1905IFKY/"
},
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM1905IFKY](/tissues/IGVFSM1905IFKY/) has in progress subobject phenotype term [DOID_2377](/phenotype-terms/DOID_2377/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM1905IFKY/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM1905IFKY](/tissues/IGVFSM1905IFKY/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM1905IFKY/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T04:14:33.423865+00:00",
"date_obtained": "2023-03-09",
"disease_terms": [
{
"@id": "/phenotype-terms/MONDO_0004975/",
"status": "released",
"term_name": "Alzheimer disease"
},
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/DOID_2377/",
"status": "in progress",
"term_name": "multiple sclerosis"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO8155MCUV/",
"accession": "IGVFDO8155MCUV",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS3148PUJM/",
"accession": "IGVFDS3148PUJM",
"aliases": [
"igvf:corces_measurementSet_X042_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0551JWHB/",
"accession": "IGVFDS0551JWHB",
"aliases": [
"igvf:corces_measurementSet_X042_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6059WKSH/",
"accession": "IGVFDS6059WKSH",
"aliases": [
"igvf:corces_measurementSet_X042_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5672IBLK/",
"accession": "IGVFDS5672IBLK",
"aliases": [
"igvf:corces_measurementSet_X042_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5571QAYO/",
"accession": "IGVFDS5571QAYO",
"aliases": [
"igvf:corces_measurementSet_X042_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8148USUN/",
"accession": "IGVFDS8148USUN",
"aliases": [
"igvf:corces_measurementSet_X042_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3141FRLK/",
"accession": "IGVFDS3141FRLK",
"aliases": [
"igvf:corces_measurementSet_X042_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6532IRJT/",
"accession": "IGVFDS6532IRJT",
"aliases": [
"igvf:corces_measurementSet_X042_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6932ECNS/",
"accession": "IGVFDS6932ECNS",
"aliases": [
"igvf:corces_measurementSet_X042_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8894MIXR/",
"accession": "IGVFDS8894MIXR",
"aliases": [
"igvf:corces_measurementSet_X042_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0978UQYD/",
"accession": "IGVFDS0978UQYD",
"aliases": [
"igvf:corces_measurementSet_X042_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2377SEOL/",
"accession": "IGVFDS2377SEOL",
"aliases": [
"igvf:corces_measurementSet_X042_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3959TIPT/",
"accession": "IGVFDS3959TIPT",
"aliases": [
"igvf:corces_measurementSet_X042_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8659VRHH/",
"accession": "IGVFDS8659VRHH",
"aliases": [
"igvf:corces_measurementSet_X042_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1395GBFX/",
"accession": "IGVFDS1395GBFX",
"aliases": [
"igvf:corces_measurementSet_X042_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8219ZWGY/",
"accession": "IGVFDS8219ZWGY",
"aliases": [
"igvf:corces_measurementSet_X042_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3622WNKQ/",
"accession": "IGVFDS3622WNKQ",
"aliases": [
"igvf:corces_measurementSet_RP013_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7473ITUN/",
"accession": "IGVFDS7473ITUN",
"aliases": [
"igvf:corces_measurementSet_RP013_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2391MEXB/",
"accession": "IGVFDS2391MEXB",
"aliases": [
"igvf:corces_measurementSet_RP013_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4413FCPJ/",
"accession": "IGVFDS4413FCPJ",
"aliases": [
"igvf:corces_measurementSet_RP013_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7055SHHA/",
"accession": "IGVFDS7055SHHA",
"aliases": [
"igvf:corces_measurementSet_RP013_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6105WUJZ/",
"accession": "IGVFDS6105WUJZ",
"aliases": [
"igvf:corces_measurementSet_RP013_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2373GWYA/",
"accession": "IGVFDS2373GWYA",
"aliases": [
"igvf:corces_measurementSet_RP013_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8759JYNP/",
"accession": "IGVFDS8759JYNP",
"aliases": [
"igvf:corces_measurementSet_RP013_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3109FOBL/",
"accession": "IGVFDS3109FOBL",
"aliases": [
"igvf:corces_measurementSet_RP013_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6915EFKE/",
"accession": "IGVFDS6915EFKE",
"aliases": [
"igvf:corces_measurementSet_RP013_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0028AWOA/",
"accession": "IGVFDS0028AWOA",
"aliases": [
"igvf:corces_measurementSet_RP013_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5571RDTA/",
"accession": "IGVFDS5571RDTA",
"aliases": [
"igvf:corces_measurementSet_RP013_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0088WTOH/",
"accession": "IGVFDS0088WTOH",
"aliases": [
"igvf:corces_measurementSet_RP013_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9639FMLS/",
"accession": "IGVFDS9639FMLS",
"aliases": [
"igvf:corces_measurementSet_RP013_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5114LZUX/",
"accession": "IGVFDS5114LZUX",
"aliases": [
"igvf:corces_measurementSet_RP013_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5127RSAZ/",
"accession": "IGVFDS5127RSAZ",
"aliases": [
"igvf:corces_measurementSet_RP013_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 82,
"lower_bound_age_in_hours": 718320,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM2480DKQY/",
"accession": "IGVFSM2480DKQY",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1132ELYG/",
"accession": "IGVFSM1132ELYG",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3739CWYU/",
"accession": "IGVFSM3739CWYU",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6255JGZM/",
"accession": "IGVFSM6255JGZM",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1167MABH/",
"accession": "IGVFSM1167MABH",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2293QQTO/",
"accession": "IGVFSM2293QQTO",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8971IRDZ/",
"accession": "IGVFSM8971IRDZ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9775XYEX/",
"accession": "IGVFSM9775XYEX",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM5080SUXQ/",
"accession": "IGVFSM5080SUXQ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2861OAVH/",
"accession": "IGVFSM2861OAVH",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7640TBFV/",
"accession": "IGVFSM7640TBFV",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3819ZCMN/",
"accession": "IGVFSM3819ZCMN",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1576QCMO/",
"accession": "IGVFSM1576QCMO",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7012MRMQ/",
"accession": "IGVFSM7012MRMQ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8342TFWF/",
"accession": "IGVFSM8342TFWF",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6292QYDO/",
"accession": "IGVFSM6292QYDO",
"status": "preview"
}
],
"origin_of": [],
"parts": [],
"pmi": 135,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"status": "preview",
"term_name": "putamen"
}
],
"schema_version": "21",
"sex": "female",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (female, 82 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis",
"taxa": "Homo sapiens",
"upper_bound_age": 82,
"upper_bound_age_in_hours": 718320,
"uuid": "3b689a9c-dd97-471b-9289-13677da059a5",
"virtual": false
}