cerebellar cortex — IGVFSM1879JDBN

1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM1879JDBN/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM1879JDBN",
11    "age": "81",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN9702_CBL"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing CCF ID",
20                "detail": "Tissue [IGVFSM1879JDBN](/tissues/IGVFSM1879JDBN/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_tissue_ccf_id",
24                "path": "/tissues/IGVFSM1879JDBN/"
25            }
26        ]
27    },
28    "award": {
29        "@id": "/awards/HG012076/",
30        "component": "mapping"
31    },
32    "classifications": [
33        "tissue"
34    ],
35    "creation_timestamp": "2025-03-19T04:14:15.748970+00:00",
36    "date_obtained": "2023-02-22",
37    "donors": [
38        {
39            "@id": "/human-donors/IGVFDO4103FHPT/",
40            "accession": "IGVFDO4103FHPT",
41            "ethnicities": [
42                "European"
43            ],
44            "status": "preview"
45        }
46    ],
47    "file_sets": [
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49            "@id": "/measurement-sets/IGVFDS5733DNRB/",
50            "accession": "IGVFDS5733DNRB",
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52                "igvf:corces_measurementSet_X040_G7_ATAC"
53            ],
54            "file_set_type": "experimental data",
55            "lab": {
56                "title": "Ryan Corces, Gladstone Institute UCSF"
57            },
58            "preferred_assay_title": "10x multiome",
59            "status": "preview",
60            "summary": "single-nucleus ATAC-seq (10x multiome)"
61        },
62        {
63            "@id": "/measurement-sets/IGVFDS8796ZGJG/",
64            "accession": "IGVFDS8796ZGJG",
65            "aliases": [
66                "igvf:corces_measurementSet_X040_G7_RNA"
67            ],
68            "file_set_type": "experimental data",
69            "lab": {
70                "title": "Ryan Corces, Gladstone Institute UCSF"
71            },
72            "preferred_assay_title": "10x multiome",
73            "status": "preview",
74            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
75        },
76        {
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81            ],
82            "file_set_type": "experimental data",
83            "lab": {
84                "title": "Ryan Corces, Gladstone Institute UCSF"
85            },
86            "preferred_assay_title": "10x multiome",
87            "status": "preview",
88            "summary": "single-nucleus ATAC-seq (10x multiome)"
89        },
90        {
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93            "aliases": [
94                "igvf:corces_measurementSet_X040_G3_RNA"
95            ],
96            "file_set_type": "experimental data",
97            "lab": {
98                "title": "Ryan Corces, Gladstone Institute UCSF"
99            },
100            "preferred_assay_title": "10x multiome",
101            "status": "preview",
102            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
103        },
104        {
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106            "accession": "IGVFDS5414UFNC",
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108                "igvf:corces_measurementSet_X040_G1_ATAC"
109            ],
110            "file_set_type": "experimental data",
111            "lab": {
112                "title": "Ryan Corces, Gladstone Institute UCSF"
113            },
114            "preferred_assay_title": "10x multiome",
115            "status": "preview",
116            "summary": "single-nucleus ATAC-seq (10x multiome)"
117        },
118        {
119            "@id": "/measurement-sets/IGVFDS2806EVXQ/",
120            "accession": "IGVFDS2806EVXQ",
121            "aliases": [
122                "igvf:corces_measurementSet_X040_G1_RNA"
123            ],
124            "file_set_type": "experimental data",
125            "lab": {
126                "title": "Ryan Corces, Gladstone Institute UCSF"
127            },
128            "preferred_assay_title": "10x multiome",
129            "status": "preview",
130            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
131        },
132        {
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134            "accession": "IGVFDS8948WYQH",
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137            ],
138            "file_set_type": "experimental data",
139            "lab": {
140                "title": "Ryan Corces, Gladstone Institute UCSF"
141            },
142            "preferred_assay_title": "10x multiome",
143            "status": "preview",
144            "summary": "single-nucleus ATAC-seq (10x multiome)"
145        },
146        {
147            "@id": "/measurement-sets/IGVFDS1158PFBA/",
148            "accession": "IGVFDS1158PFBA",
149            "aliases": [
150                "igvf:corces_measurementSet_X040_G8_RNA"
151            ],
152            "file_set_type": "experimental data",
153            "lab": {
154                "title": "Ryan Corces, Gladstone Institute UCSF"
155            },
156            "preferred_assay_title": "10x multiome",
157            "status": "preview",
158            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
159        },
160        {
161            "@id": "/measurement-sets/IGVFDS1310RPDD/",
162            "accession": "IGVFDS1310RPDD",
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164                "igvf:corces_measurementSet_X040_G4_ATAC"
165            ],
166            "file_set_type": "experimental data",
167            "lab": {
168                "title": "Ryan Corces, Gladstone Institute UCSF"
169            },
170            "preferred_assay_title": "10x multiome",
171            "status": "preview",
172            "summary": "single-nucleus ATAC-seq (10x multiome)"
173        },
174        {
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178                "igvf:corces_measurementSet_X040_G4_RNA"
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180            "file_set_type": "experimental data",
181            "lab": {
182                "title": "Ryan Corces, Gladstone Institute UCSF"
183            },
184            "preferred_assay_title": "10x multiome",
185            "status": "preview",
186            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
187        },
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195            "lab": {
196                "title": "Ryan Corces, Gladstone Institute UCSF"
197            },
198            "preferred_assay_title": "10x multiome",
199            "status": "preview",
200            "summary": "single-nucleus ATAC-seq (10x multiome)"
201        },
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205            "aliases": [
206                "igvf:corces_measurementSet_X040_G6_RNA"
207            ],
208            "file_set_type": "experimental data",
209            "lab": {
210                "title": "Ryan Corces, Gladstone Institute UCSF"
211            },
212            "preferred_assay_title": "10x multiome",
213            "status": "preview",
214            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
215        },
216        {
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218            "accession": "IGVFDS8899IUPN",
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220                "igvf:corces_measurementSet_X040_G5_ATAC"
221            ],
222            "file_set_type": "experimental data",
223            "lab": {
224                "title": "Ryan Corces, Gladstone Institute UCSF"
225            },
226            "preferred_assay_title": "10x multiome",
227            "status": "preview",
228            "summary": "single-nucleus ATAC-seq (10x multiome)"
229        },
230        {
231            "@id": "/measurement-sets/IGVFDS4045ZVBI/",
232            "accession": "IGVFDS4045ZVBI",
233            "aliases": [
234                "igvf:corces_measurementSet_X040_G5_RNA"
235            ],
236            "file_set_type": "experimental data",
237            "lab": {
238                "title": "Ryan Corces, Gladstone Institute UCSF"
239            },
240            "preferred_assay_title": "10x multiome",
241            "status": "preview",
242            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
243        },
244        {
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246            "accession": "IGVFDS2033BVMC",
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248                "igvf:corces_measurementSet_X040_G2_ATAC"
249            ],
250            "file_set_type": "experimental data",
251            "lab": {
252                "title": "Ryan Corces, Gladstone Institute UCSF"
253            },
254            "preferred_assay_title": "10x multiome",
255            "status": "preview",
256            "summary": "single-nucleus ATAC-seq (10x multiome)"
257        },
258        {
259            "@id": "/measurement-sets/IGVFDS7813FCIC/",
260            "accession": "IGVFDS7813FCIC",
261            "aliases": [
262                "igvf:corces_measurementSet_X040_G2_RNA"
263            ],
264            "file_set_type": "experimental data",
265            "lab": {
266                "title": "Ryan Corces, Gladstone Institute UCSF"
267            },
268            "preferred_assay_title": "10x multiome",
269            "status": "preview",
270            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
271        }
272    ],
273    "institutional_certificates": [
274        {
275            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
276            "certificate_identifier": "IP115-05",
277            "controlled_access": false,
278            "data_use_limitation_summary": "No limitations",
279            "status": "in progress"
280        }
281    ],
282    "lab": {
283        "@id": "/labs/ryan-corces/",
284        "title": "Ryan Corces, Gladstone Institute UCSF"
285    },
286    "lower_bound_age": 81,
287    "lower_bound_age_in_hours": 709560,
288    "multiplexed_in": [
289        {
290            "@id": "/multiplexed-samples/IGVFSM3718ZLPR/",
291            "accession": "IGVFSM3718ZLPR",
292            "status": "preview"
293        },
294        {
295            "@id": "/multiplexed-samples/IGVFSM1109QIDV/",
296            "accession": "IGVFSM1109QIDV",
297            "status": "preview"
298        },
299        {
300            "@id": "/multiplexed-samples/IGVFSM7243MOJZ/",
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302            "status": "preview"
303        },
304        {
305            "@id": "/multiplexed-samples/IGVFSM7148SYPE/",
306            "accession": "IGVFSM7148SYPE",
307            "status": "preview"
308        },
309        {
310            "@id": "/multiplexed-samples/IGVFSM1867DNXU/",
311            "accession": "IGVFSM1867DNXU",
312            "status": "preview"
313        },
314        {
315            "@id": "/multiplexed-samples/IGVFSM9187MAHV/",
316            "accession": "IGVFSM9187MAHV",
317            "status": "preview"
318        },
319        {
320            "@id": "/multiplexed-samples/IGVFSM6104DPZN/",
321            "accession": "IGVFSM6104DPZN",
322            "status": "preview"
323        },
324        {
325            "@id": "/multiplexed-samples/IGVFSM7690RNGC/",
326            "accession": "IGVFSM7690RNGC",
327            "status": "preview"
328        }
329    ],
330    "origin_of": [],
331    "parts": [],
332    "pmi": 165,
333    "pmi_units": "minute",
334    "pooled_in": [],
335    "preservation_method": "flash-freezing",
336    "protocols": [
337        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
338    ],
339    "sample_terms": [
340        {
341            "@id": "/sample-terms/UBERON_0002129/",
342            "status": "preview",
343            "term_name": "cerebellar cortex"
344        }
345    ],
346    "schema_version": "21",
347    "sex": "male",
348    "sorted_fractions": [],
349    "sources": [
350        {
351            "@id": "/sources/banner-health/",
352            "status": "released",
353            "title": "Banner Health"
354        }
355    ],
356    "status": "preview",
357    "submitted_by": {
358        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
359        "title": "Ryan Corces"
360    },
361    "summary": "Homo sapiens (male, 81 years) cerebellar cortex tissue",
362    "taxa": "Homo sapiens",
363    "upper_bound_age": 81,
364    "upper_bound_age_in_hours": 709560,
365    "uuid": "c21333ce-ea9b-4eb0-af92-7261701b4cc2",
366    "virtual": false
367}