posterior cingulate gyrus — IGVFSM1812SSCI

1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM1812SSCI/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM1812SSCI",
11    "age": "52",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1737_CING"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing CCF ID",
20                "detail": "Tissue [IGVFSM1812SSCI](/tissues/IGVFSM1812SSCI/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_tissue_ccf_id",
24                "path": "/tissues/IGVFSM1812SSCI/"
25            }
26        ]
27    },
28    "award": {
29        "@id": "/awards/HG012076/",
30        "component": "mapping"
31    },
32    "classifications": [
33        "tissue"
34    ],
35    "creation_timestamp": "2025-03-19T04:15:27.344393+00:00",
36    "date_obtained": "2023-03-16",
37    "donors": [
38        {
39            "@id": "/human-donors/IGVFDO8891KXRJ/",
40            "accession": "IGVFDO8891KXRJ",
41            "ethnicities": [
42                "European"
43            ],
44            "status": "preview"
45        }
46    ],
47    "file_sets": [
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52                "igvf:corces_measurementSet_X046_G7_ATAC"
53            ],
54            "file_set_type": "experimental data",
55            "lab": {
56                "title": "Ryan Corces, Gladstone Institute UCSF"
57            },
58            "preferred_assay_title": "10x multiome",
59            "status": "preview",
60            "summary": "single-nucleus ATAC-seq (10x multiome)"
61        },
62        {
63            "@id": "/measurement-sets/IGVFDS6023ZQUI/",
64            "accession": "IGVFDS6023ZQUI",
65            "aliases": [
66                "igvf:corces_measurementSet_X046_G7_RNA"
67            ],
68            "file_set_type": "experimental data",
69            "lab": {
70                "title": "Ryan Corces, Gladstone Institute UCSF"
71            },
72            "preferred_assay_title": "10x multiome",
73            "status": "preview",
74            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
75        },
76        {
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78            "accession": "IGVFDS7624FKBF",
79            "aliases": [
80                "igvf:corces_measurementSet_X046_G8_ATAC"
81            ],
82            "file_set_type": "experimental data",
83            "lab": {
84                "title": "Ryan Corces, Gladstone Institute UCSF"
85            },
86            "preferred_assay_title": "10x multiome",
87            "status": "preview",
88            "summary": "single-nucleus ATAC-seq (10x multiome)"
89        },
90        {
91            "@id": "/measurement-sets/IGVFDS0394LTRL/",
92            "accession": "IGVFDS0394LTRL",
93            "aliases": [
94                "igvf:corces_measurementSet_X046_G8_RNA"
95            ],
96            "file_set_type": "experimental data",
97            "lab": {
98                "title": "Ryan Corces, Gladstone Institute UCSF"
99            },
100            "preferred_assay_title": "10x multiome",
101            "status": "preview",
102            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
103        },
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106            "accession": "IGVFDS8203AABC",
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108                "igvf:corces_measurementSet_X046_G4_ATAC"
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110            "file_set_type": "experimental data",
111            "lab": {
112                "title": "Ryan Corces, Gladstone Institute UCSF"
113            },
114            "preferred_assay_title": "10x multiome",
115            "status": "preview",
116            "summary": "single-nucleus ATAC-seq (10x multiome)"
117        },
118        {
119            "@id": "/measurement-sets/IGVFDS5259BNNW/",
120            "accession": "IGVFDS5259BNNW",
121            "aliases": [
122                "igvf:corces_measurementSet_X046_G4_RNA"
123            ],
124            "file_set_type": "experimental data",
125            "lab": {
126                "title": "Ryan Corces, Gladstone Institute UCSF"
127            },
128            "preferred_assay_title": "10x multiome",
129            "status": "preview",
130            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
131        },
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137            ],
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139            "lab": {
140                "title": "Ryan Corces, Gladstone Institute UCSF"
141            },
142            "preferred_assay_title": "10x multiome",
143            "status": "preview",
144            "summary": "single-nucleus ATAC-seq (10x multiome)"
145        },
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151            ],
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153            "lab": {
154                "title": "Ryan Corces, Gladstone Institute UCSF"
155            },
156            "preferred_assay_title": "10x multiome",
157            "status": "preview",
158            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
159        },
160        {
161            "@id": "/measurement-sets/IGVFDS3046IPKB/",
162            "accession": "IGVFDS3046IPKB",
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164                "igvf:corces_measurementSet_X046_G3_ATAC"
165            ],
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167            "lab": {
168                "title": "Ryan Corces, Gladstone Institute UCSF"
169            },
170            "preferred_assay_title": "10x multiome",
171            "status": "preview",
172            "summary": "single-nucleus ATAC-seq (10x multiome)"
173        },
174        {
175            "@id": "/measurement-sets/IGVFDS5369HKHB/",
176            "accession": "IGVFDS5369HKHB",
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178                "igvf:corces_measurementSet_X046_G3_RNA"
179            ],
180            "file_set_type": "experimental data",
181            "lab": {
182                "title": "Ryan Corces, Gladstone Institute UCSF"
183            },
184            "preferred_assay_title": "10x multiome",
185            "status": "preview",
186            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
187        },
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195            "lab": {
196                "title": "Ryan Corces, Gladstone Institute UCSF"
197            },
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199            "status": "preview",
200            "summary": "single-nucleus ATAC-seq (10x multiome)"
201        },
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206                "igvf:corces_measurementSet_X046_G5_RNA"
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209            "lab": {
210                "title": "Ryan Corces, Gladstone Institute UCSF"
211            },
212            "preferred_assay_title": "10x multiome",
213            "status": "preview",
214            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
215        },
216        {
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218            "accession": "IGVFDS3724MEFH",
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220                "igvf:corces_measurementSet_X046_G6_ATAC"
221            ],
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223            "lab": {
224                "title": "Ryan Corces, Gladstone Institute UCSF"
225            },
226            "preferred_assay_title": "10x multiome",
227            "status": "preview",
228            "summary": "single-nucleus ATAC-seq (10x multiome)"
229        },
230        {
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234                "igvf:corces_measurementSet_X046_G6_RNA"
235            ],
236            "file_set_type": "experimental data",
237            "lab": {
238                "title": "Ryan Corces, Gladstone Institute UCSF"
239            },
240            "preferred_assay_title": "10x multiome",
241            "status": "preview",
242            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
243        },
244        {
245            "@id": "/measurement-sets/IGVFDS4582DKSD/",
246            "accession": "IGVFDS4582DKSD",
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249            ],
250            "file_set_type": "experimental data",
251            "lab": {
252                "title": "Ryan Corces, Gladstone Institute UCSF"
253            },
254            "preferred_assay_title": "10x multiome",
255            "status": "preview",
256            "summary": "single-nucleus ATAC-seq (10x multiome)"
257        },
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262                "igvf:corces_measurementSet_X046_G1_RNA"
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265            "lab": {
266                "title": "Ryan Corces, Gladstone Institute UCSF"
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269            "status": "preview",
270            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
271        },
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280                "title": "Ryan Corces, Gladstone Institute UCSF"
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283            "status": "preview",
284            "summary": "single-nucleus ATAC-seq (10x multiome)"
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294                "title": "Ryan Corces, Gladstone Institute UCSF"
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296            "preferred_assay_title": "10x multiome",
297            "status": "preview",
298            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
299        },
300        {
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307            "lab": {
308                "title": "Ryan Corces, Gladstone Institute UCSF"
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311            "status": "preview",
312            "summary": "single-nucleus ATAC-seq (10x multiome)"
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321            "lab": {
322                "title": "Ryan Corces, Gladstone Institute UCSF"
323            },
324            "preferred_assay_title": "10x multiome",
325            "status": "preview",
326            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
327        },
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333            ],
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335            "lab": {
336                "title": "Ryan Corces, Gladstone Institute UCSF"
337            },
338            "preferred_assay_title": "10x multiome",
339            "status": "preview",
340            "summary": "single-nucleus ATAC-seq (10x multiome)"
341        },
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349            "lab": {
350                "title": "Ryan Corces, Gladstone Institute UCSF"
351            },
352            "preferred_assay_title": "10x multiome",
353            "status": "preview",
354            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
355        },
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363            "lab": {
364                "title": "Ryan Corces, Gladstone Institute UCSF"
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367            "status": "preview",
368            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
369        },
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377            "lab": {
378                "title": "Ryan Corces, Gladstone Institute UCSF"
379            },
380            "preferred_assay_title": "10x multiome",
381            "status": "preview",
382            "summary": "single-nucleus ATAC-seq (10x multiome)"
383        }
384    ],
385    "institutional_certificates": [
386        {
387            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
388            "certificate_identifier": "IP115-05",
389            "controlled_access": false,
390            "status": "in progress"
391        }
392    ],
393    "lab": {
394        "@id": "/labs/ryan-corces/",
395        "title": "Ryan Corces, Gladstone Institute UCSF"
396    },
397    "lower_bound_age": 52,
398    "lower_bound_age_in_hours": 455520,
399    "multiplexed_in": [
400        {
401            "@id": "/multiplexed-samples/IGVFSM5223WGIQ/",
402            "accession": "IGVFSM5223WGIQ",
403            "status": "preview"
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405        {
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408            "status": "preview"
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413            "status": "preview"
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415        {
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418            "status": "preview"
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420        {
421            "@id": "/multiplexed-samples/IGVFSM5266CSDR/",
422            "accession": "IGVFSM5266CSDR",
423            "status": "preview"
424        },
425        {
426            "@id": "/multiplexed-samples/IGVFSM2300MKEN/",
427            "accession": "IGVFSM2300MKEN",
428            "status": "preview"
429        },
430        {
431            "@id": "/multiplexed-samples/IGVFSM4792JPXR/",
432            "accession": "IGVFSM4792JPXR",
433            "status": "preview"
434        },
435        {
436            "@id": "/multiplexed-samples/IGVFSM2825UXQB/",
437            "accession": "IGVFSM2825UXQB",
438            "status": "preview"
439        },
440        {
441            "@id": "/multiplexed-samples/IGVFSM4613OXKG/",
442            "accession": "IGVFSM4613OXKG",
443            "status": "preview"
444        },
445        {
446            "@id": "/multiplexed-samples/IGVFSM3608VEWP/",
447            "accession": "IGVFSM3608VEWP",
448            "status": "preview"
449        },
450        {
451            "@id": "/multiplexed-samples/IGVFSM7198XDQQ/",
452            "accession": "IGVFSM7198XDQQ",
453            "status": "preview"
454        },
455        {
456            "@id": "/multiplexed-samples/IGVFSM9853HKYG/",
457            "accession": "IGVFSM9853HKYG",
458            "status": "preview"
459        }
460    ],
461    "origin_of": [],
462    "parts": [],
463    "pmi": 280,
464    "pmi_units": "minute",
465    "pooled_in": [],
466    "preservation_method": "flash-freezing",
467    "protocols": [
468        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
469    ],
470    "sample_terms": [
471        {
472            "@id": "/sample-terms/UBERON_0002740/",
473            "status": "preview",
474            "term_name": "posterior cingulate gyrus"
475        }
476    ],
477    "schema_version": "21",
478    "sex": "female",
479    "sorted_fractions": [],
480    "sources": [
481        {
482            "@id": "/sources/banner-health/",
483            "status": "released",
484            "title": "Banner Health"
485        }
486    ],
487    "status": "preview",
488    "submitted_by": {
489        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
490        "title": "Ryan Corces"
491    },
492    "summary": "Homo sapiens (female, 52 years) posterior cingulate gyrus tissue",
493    "taxa": "Homo sapiens",
494    "upper_bound_age": 52,
495    "upper_bound_age_in_hours": 455520,
496    "uuid": "e8174b99-04e9-4ba9-89de-4edd1925ebcf",
497    "virtual": false
498}