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putamen — IGVFSM1769ULWE
putamen — IGVFSM1769ULWE
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Summary
Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease
Sample Terms
putamen
Sex
male
Age
70 years
Post-mortem Interval
247 minutes
Preservation Method
flash-freezing
Taxa
Homo sapiens
Sources
banner-health
Date Harvested
February 1, 2023
Aliases
igvf:corces_tissue_BANN1639_PUT
Protocols
https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO7186XJLL
igvf:corces_donor_BANN1639
male
Homo sapiens
File Sets
48 items
1
2
3
4
5
Accession
Summary
Aliases
Lab
IGVFDS0346MQLV
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X032_G2_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS0615WYVU
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP031_G4_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS0831CAYJ
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP011_G4_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS0856IUPF
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP011_G6_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS1279DJVE
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP011_G3_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS1602DOZK
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP031_G3_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS1748RGNP
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP031_G1_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS1855NJXL
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP031_G6_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS2132XMHB
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_X032_G4_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS2154EKES
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP031_G1_RNA
Ryan Corces, Gladstone Institute UCSF
Multiplexed In Samples
24 items
1
2
3
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM0643EUKR
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples
IGVFSM0695RJYV
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples
IGVFSM0980JQZM
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples
IGVFSM1595JOHE
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples
IGVFSM2646IJIB
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
IGVFSM2759HMOI
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples
IGVFSM2932RFCB
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples
IGVFSM3747QRCH
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples
IGVFSM4137SEKT
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples
IGVFSM5471WRIH
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF