{
"@context": "/terms/",
"@id": "/tissues/IGVFSM1564MGMQ/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1564MGMQ",
"age": "81",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN1584_MTG"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM1564MGMQ](/tissues/IGVFSM1564MGMQ/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM1564MGMQ/"
},
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM1564MGMQ](/tissues/IGVFSM1564MGMQ/) has in progress subobject phenotype term [DOID_0080832](/phenotype-terms/DOID_0080832/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM1564MGMQ/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM1564MGMQ](/tissues/IGVFSM1564MGMQ/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM1564MGMQ/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T04:13:58.959717+00:00",
"date_obtained": "2023-02-22",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO1193ADXF/",
"accession": "IGVFDO1193ADXF",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS9037WATJ/",
"accession": "IGVFDS9037WATJ",
"aliases": [
"igvf:corces_measurementSet_X039_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2448KDEL/",
"accession": "IGVFDS2448KDEL",
"aliases": [
"igvf:corces_measurementSet_X039_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3979YUTV/",
"accession": "IGVFDS3979YUTV",
"aliases": [
"igvf:corces_measurementSet_X039_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3433MQHU/",
"accession": "IGVFDS3433MQHU",
"aliases": [
"igvf:corces_measurementSet_X039_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0948OFTV/",
"accession": "IGVFDS0948OFTV",
"aliases": [
"igvf:corces_measurementSet_X039_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3861RJLB/",
"accession": "IGVFDS3861RJLB",
"aliases": [
"igvf:corces_measurementSet_X039_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2816YXCJ/",
"accession": "IGVFDS2816YXCJ",
"aliases": [
"igvf:corces_measurementSet_X039_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8457JNIV/",
"accession": "IGVFDS8457JNIV",
"aliases": [
"igvf:corces_measurementSet_X039_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6300CCBZ/",
"accession": "IGVFDS6300CCBZ",
"aliases": [
"igvf:corces_measurementSet_X039_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8238EXJQ/",
"accession": "IGVFDS8238EXJQ",
"aliases": [
"igvf:corces_measurementSet_X039_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7653EYZX/",
"accession": "IGVFDS7653EYZX",
"aliases": [
"igvf:corces_measurementSet_X039_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8059TAGM/",
"accession": "IGVFDS8059TAGM",
"aliases": [
"igvf:corces_measurementSet_X039_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3068NKFQ/",
"accession": "IGVFDS3068NKFQ",
"aliases": [
"igvf:corces_measurementSet_X039_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9790ACKH/",
"accession": "IGVFDS9790ACKH",
"aliases": [
"igvf:corces_measurementSet_X039_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4967SVTM/",
"accession": "IGVFDS4967SVTM",
"aliases": [
"igvf:corces_measurementSet_X039_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6013DGAO/",
"accession": "IGVFDS6013DGAO",
"aliases": [
"igvf:corces_measurementSet_X039_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 81,
"lower_bound_age_in_hours": 709560,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM9156NSGE/",
"accession": "IGVFSM9156NSGE",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7812ERJN/",
"accession": "IGVFSM7812ERJN",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3629YHDD/",
"accession": "IGVFSM3629YHDD",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6375ILFJ/",
"accession": "IGVFSM6375ILFJ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2908VCJO/",
"accession": "IGVFSM2908VCJO",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1761LAJP/",
"accession": "IGVFSM1761LAJP",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4211DBUX/",
"accession": "IGVFSM4211DBUX",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7823HUBP/",
"accession": "IGVFSM7823HUBP",
"status": "preview"
}
],
"origin_of": [],
"parts": [],
"pmi": 143,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 81 years) middle temporal gyrus tissue associated with Parkinson's disease, mild cognitive impairment",
"taxa": "Homo sapiens",
"upper_bound_age": 81,
"upper_bound_age_in_hours": 709560,
"uuid": "7943ae9d-9598-4307-a713-aabb9c13e2c1",
"virtual": false
}