posterior cingulate gyrus — IGVFSM1537ESYC

preview
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM1537ESYC/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM1537ESYC",
11    "age": "76",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1833_CING"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM1537ESYC](/tissues/IGVFSM1537ESYC/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM1537ESYC/"
25            },
26            {
27                "category": "missing CCF ID",
28                "detail": "Tissue [IGVFSM1537ESYC](/tissues/IGVFSM1537ESYC/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_tissue_ccf_id",
32                "path": "/tissues/IGVFSM1537ESYC/"
33            }
34        ]
35    },
36    "award": {
37        "@id": "/awards/HG012076/",
38        "component": "mapping"
39    },
40    "classifications": [
41        "tissue"
42    ],
43    "creation_timestamp": "2025-03-19T04:10:13.657790+00:00",
44    "date_obtained": "2022-11-29",
45    "disease_terms": [
46        {
47            "@id": "/phenotype-terms/DOID_14330/",
48            "status": "in progress",
49            "term_name": "Parkinson's disease"
50        }
51    ],
52    "donors": [
53        {
54            "@id": "/human-donors/IGVFDO4812DEVH/",
55            "accession": "IGVFDO4812DEVH",
56            "ethnicities": [
57                "European"
58            ],
59            "status": "preview"
60        }
61    ],
62    "file_sets": [
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65            "accession": "IGVFDS6736LYRQ",
66            "aliases": [
67                "igvf:corces_measurementSet_X019_G4_ATAC"
68            ],
69            "file_set_type": "experimental data",
70            "lab": {
71                "title": "Ryan Corces, Gladstone Institute UCSF"
72            },
73            "preferred_assay_title": "10x multiome",
74            "status": "preview",
75            "summary": "single-nucleus ATAC-seq (10x multiome)"
76        },
77        {
78            "@id": "/measurement-sets/IGVFDS1525DIBQ/",
79            "accession": "IGVFDS1525DIBQ",
80            "aliases": [
81                "igvf:corces_measurementSet_X019_G4_RNA"
82            ],
83            "file_set_type": "experimental data",
84            "lab": {
85                "title": "Ryan Corces, Gladstone Institute UCSF"
86            },
87            "preferred_assay_title": "10x multiome",
88            "status": "preview",
89            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
90        },
91        {
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93            "accession": "IGVFDS5254MWSY",
94            "aliases": [
95                "igvf:corces_measurementSet_X019_G2_ATAC"
96            ],
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98            "lab": {
99                "title": "Ryan Corces, Gladstone Institute UCSF"
100            },
101            "preferred_assay_title": "10x multiome",
102            "status": "preview",
103            "summary": "single-nucleus ATAC-seq (10x multiome)"
104        },
105        {
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107            "accession": "IGVFDS5680MIKN",
108            "aliases": [
109                "igvf:corces_measurementSet_X019_G2_RNA"
110            ],
111            "file_set_type": "experimental data",
112            "lab": {
113                "title": "Ryan Corces, Gladstone Institute UCSF"
114            },
115            "preferred_assay_title": "10x multiome",
116            "status": "preview",
117            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
118        },
119        {
120            "@id": "/measurement-sets/IGVFDS6875UIRT/",
121            "accession": "IGVFDS6875UIRT",
122            "aliases": [
123                "igvf:corces_measurementSet_X019_G3_ATAC"
124            ],
125            "file_set_type": "experimental data",
126            "lab": {
127                "title": "Ryan Corces, Gladstone Institute UCSF"
128            },
129            "preferred_assay_title": "10x multiome",
130            "status": "preview",
131            "summary": "single-nucleus ATAC-seq (10x multiome)"
132        },
133        {
134            "@id": "/measurement-sets/IGVFDS9444FAGC/",
135            "accession": "IGVFDS9444FAGC",
136            "aliases": [
137                "igvf:corces_measurementSet_X019_G3_RNA"
138            ],
139            "file_set_type": "experimental data",
140            "lab": {
141                "title": "Ryan Corces, Gladstone Institute UCSF"
142            },
143            "preferred_assay_title": "10x multiome",
144            "status": "preview",
145            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
146        },
147        {
148            "@id": "/measurement-sets/IGVFDS4972YWYE/",
149            "accession": "IGVFDS4972YWYE",
150            "aliases": [
151                "igvf:corces_measurementSet_X019_G1_ATAC"
152            ],
153            "file_set_type": "experimental data",
154            "lab": {
155                "title": "Ryan Corces, Gladstone Institute UCSF"
156            },
157            "preferred_assay_title": "10x multiome",
158            "status": "preview",
159            "summary": "single-nucleus ATAC-seq (10x multiome)"
160        },
161        {
162            "@id": "/measurement-sets/IGVFDS4277JFOH/",
163            "accession": "IGVFDS4277JFOH",
164            "aliases": [
165                "igvf:corces_measurementSet_X019_G1_RNA"
166            ],
167            "file_set_type": "experimental data",
168            "lab": {
169                "title": "Ryan Corces, Gladstone Institute UCSF"
170            },
171            "preferred_assay_title": "10x multiome",
172            "status": "preview",
173            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
174        },
175        {
176            "@id": "/measurement-sets/IGVFDS6520VCSN/",
177            "accession": "IGVFDS6520VCSN",
178            "aliases": [
179                "igvf:corces_measurementSet_X019_G6_ATAC"
180            ],
181            "file_set_type": "experimental data",
182            "lab": {
183                "title": "Ryan Corces, Gladstone Institute UCSF"
184            },
185            "preferred_assay_title": "10x multiome",
186            "status": "preview",
187            "summary": "single-nucleus ATAC-seq (10x multiome)"
188        },
189        {
190            "@id": "/measurement-sets/IGVFDS0924SKZZ/",
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192            "aliases": [
193                "igvf:corces_measurementSet_X019_G6_RNA"
194            ],
195            "file_set_type": "experimental data",
196            "lab": {
197                "title": "Ryan Corces, Gladstone Institute UCSF"
198            },
199            "preferred_assay_title": "10x multiome",
200            "status": "preview",
201            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
202        },
203        {
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206            "aliases": [
207                "igvf:corces_measurementSet_X019_G5_ATAC"
208            ],
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210            "lab": {
211                "title": "Ryan Corces, Gladstone Institute UCSF"
212            },
213            "preferred_assay_title": "10x multiome",
214            "status": "preview",
215            "summary": "single-nucleus ATAC-seq (10x multiome)"
216        },
217        {
218            "@id": "/measurement-sets/IGVFDS9363KBSZ/",
219            "accession": "IGVFDS9363KBSZ",
220            "aliases": [
221                "igvf:corces_measurementSet_X019_G5_RNA"
222            ],
223            "file_set_type": "experimental data",
224            "lab": {
225                "title": "Ryan Corces, Gladstone Institute UCSF"
226            },
227            "preferred_assay_title": "10x multiome",
228            "status": "preview",
229            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
230        },
231        {
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233            "accession": "IGVFDS9294SIEC",
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235                "igvf:corces_measurementSet_X019_G7_ATAC"
236            ],
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238            "lab": {
239                "title": "Ryan Corces, Gladstone Institute UCSF"
240            },
241            "preferred_assay_title": "10x multiome",
242            "status": "preview",
243            "summary": "single-nucleus ATAC-seq (10x multiome)"
244        },
245        {
246            "@id": "/measurement-sets/IGVFDS2306FJYZ/",
247            "accession": "IGVFDS2306FJYZ",
248            "aliases": [
249                "igvf:corces_measurementSet_X019_G7_RNA"
250            ],
251            "file_set_type": "experimental data",
252            "lab": {
253                "title": "Ryan Corces, Gladstone Institute UCSF"
254            },
255            "preferred_assay_title": "10x multiome",
256            "status": "preview",
257            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
258        },
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261            "accession": "IGVFDS1812PDJF",
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263                "igvf:corces_measurementSet_X019_G8_ATAC"
264            ],
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266            "lab": {
267                "title": "Ryan Corces, Gladstone Institute UCSF"
268            },
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270            "status": "preview",
271            "summary": "single-nucleus ATAC-seq (10x multiome)"
272        },
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277                "igvf:corces_measurementSet_X019_G8_RNA"
278            ],
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281                "title": "Ryan Corces, Gladstone Institute UCSF"
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284            "status": "preview",
285            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
286        },
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291                "igvf:corces_measurementSet_RP022_G5_ATAC"
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294            "lab": {
295                "title": "Ryan Corces, Gladstone Institute UCSF"
296            },
297            "preferred_assay_title": "10x multiome",
298            "status": "preview",
299            "summary": "single-nucleus ATAC-seq (10x multiome)"
300        },
301        {
302            "@id": "/measurement-sets/IGVFDS2368FBSS/",
303            "accession": "IGVFDS2368FBSS",
304            "aliases": [
305                "igvf:corces_measurementSet_RP022_G5_RNA"
306            ],
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308            "lab": {
309                "title": "Ryan Corces, Gladstone Institute UCSF"
310            },
311            "preferred_assay_title": "10x multiome",
312            "status": "preview",
313            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
314        },
315        {
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317            "accession": "IGVFDS1107APTR",
318            "aliases": [
319                "igvf:corces_measurementSet_RP022_G2_ATAC"
320            ],
321            "file_set_type": "experimental data",
322            "lab": {
323                "title": "Ryan Corces, Gladstone Institute UCSF"
324            },
325            "preferred_assay_title": "10x multiome",
326            "status": "preview",
327            "summary": "single-nucleus ATAC-seq (10x multiome)"
328        },
329        {
330            "@id": "/measurement-sets/IGVFDS1974AEPV/",
331            "accession": "IGVFDS1974AEPV",
332            "aliases": [
333                "igvf:corces_measurementSet_RP022_G2_RNA"
334            ],
335            "file_set_type": "experimental data",
336            "lab": {
337                "title": "Ryan Corces, Gladstone Institute UCSF"
338            },
339            "preferred_assay_title": "10x multiome",
340            "status": "preview",
341            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
342        },
343        {
344            "@id": "/measurement-sets/IGVFDS2327LLPB/",
345            "accession": "IGVFDS2327LLPB",
346            "aliases": [
347                "igvf:corces_measurementSet_RP022_G6_ATAC"
348            ],
349            "file_set_type": "experimental data",
350            "lab": {
351                "title": "Ryan Corces, Gladstone Institute UCSF"
352            },
353            "preferred_assay_title": "10x multiome",
354            "status": "preview",
355            "summary": "single-nucleus ATAC-seq (10x multiome)"
356        },
357        {
358            "@id": "/measurement-sets/IGVFDS9414EOWY/",
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360            "aliases": [
361                "igvf:corces_measurementSet_RP022_G6_RNA"
362            ],
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364            "lab": {
365                "title": "Ryan Corces, Gladstone Institute UCSF"
366            },
367            "preferred_assay_title": "10x multiome",
368            "status": "preview",
369            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
370        },
371        {
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375                "igvf:corces_measurementSet_RP022_G7_ATAC"
376            ],
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378            "lab": {
379                "title": "Ryan Corces, Gladstone Institute UCSF"
380            },
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382            "status": "preview",
383            "summary": "single-nucleus ATAC-seq (10x multiome)"
384        },
385        {
386            "@id": "/measurement-sets/IGVFDS2313JSJI/",
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389                "igvf:corces_measurementSet_RP022_G7_RNA"
390            ],
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392            "lab": {
393                "title": "Ryan Corces, Gladstone Institute UCSF"
394            },
395            "preferred_assay_title": "10x multiome",
396            "status": "preview",
397            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
398        },
399        {
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403                "igvf:corces_measurementSet_RP022_G4_ATAC"
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407                "title": "Ryan Corces, Gladstone Institute UCSF"
408            },
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410            "status": "preview",
411            "summary": "single-nucleus ATAC-seq (10x multiome)"
412        },
413        {
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417                "igvf:corces_measurementSet_RP022_G4_RNA"
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421                "title": "Ryan Corces, Gladstone Institute UCSF"
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423            "preferred_assay_title": "10x multiome",
424            "status": "preview",
425            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
426        },
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434            "lab": {
435                "title": "Ryan Corces, Gladstone Institute UCSF"
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438            "status": "preview",
439            "summary": "single-nucleus ATAC-seq (10x multiome)"
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453            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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463                "title": "Ryan Corces, Gladstone Institute UCSF"
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466            "status": "preview",
467            "summary": "single-nucleus ATAC-seq (10x multiome)"
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480            "status": "preview",
481            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
482        },
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491                "title": "Ryan Corces, Gladstone Institute UCSF"
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494            "status": "preview",
495            "summary": "single-nucleus ATAC-seq (10x multiome)"
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504            "lab": {
505                "title": "Ryan Corces, Gladstone Institute UCSF"
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508            "status": "preview",
509            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
510        }
511    ],
512    "institutional_certificates": [
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516            "controlled_access": false,
517            "data_use_limitation_summary": "No limitations",
518            "status": "in progress"
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520    ],
521    "lab": {
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523        "title": "Ryan Corces, Gladstone Institute UCSF"
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525    "lower_bound_age": 76,
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601            "status": "preview"
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603        {
604            "@id": "/multiplexed-samples/IGVFSM5225FGMJ/",
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607        }
608    ],
609    "origin_of": [],
610    "parts": [],
611    "pmi": 198,
612    "pmi_units": "minute",
613    "pooled_in": [],
614    "preservation_method": "flash-freezing",
615    "protocols": [
616        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
617    ],
618    "sample_terms": [
619        {
620            "@id": "/sample-terms/UBERON_0002740/",
621            "status": "preview",
622            "term_name": "posterior cingulate gyrus"
623        }
624    ],
625    "schema_version": "21",
626    "sex": "male",
627    "sorted_fractions": [],
628    "sources": [
629        {
630            "@id": "/sources/banner-health/",
631            "status": "released",
632            "title": "Banner Health"
633        }
634    ],
635    "status": "preview",
636    "submitted_by": {
637        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
638        "title": "Ryan Corces"
639    },
640    "summary": "Homo sapiens (male, 76 years) posterior cingulate gyrus tissue associated with Parkinson's disease",
641    "taxa": "Homo sapiens",
642    "upper_bound_age": 76,
643    "upper_bound_age_in_hours": 665760,
644    "uuid": "9a08e631-e1f5-4cfb-bb49-ad889d607f28",
645    "virtual": false
646}