{
"@context": "/terms/",
"@id": "/tissues/IGVFSM1524SIAJ/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1524SIAJ",
"age": "83",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN0417_MTG"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM1524SIAJ](/tissues/IGVFSM1524SIAJ/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM1524SIAJ/"
},
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM1524SIAJ](/tissues/IGVFSM1524SIAJ/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM1524SIAJ/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM1524SIAJ](/tissues/IGVFSM1524SIAJ/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM1524SIAJ/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T04:09:06.280145+00:00",
"date_obtained": "2022-11-03",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO0877AIRF/",
"accession": "IGVFDO0877AIRF",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS0512GCRI/",
"accession": "IGVFDS0512GCRI",
"aliases": [
"igvf:corces_measurementSet_X013_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7388VUJG/",
"accession": "IGVFDS7388VUJG",
"aliases": [
"igvf:corces_measurementSet_X013_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2292VIWJ/",
"accession": "IGVFDS2292VIWJ",
"aliases": [
"igvf:corces_measurementSet_X013_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2861ILHL/",
"accession": "IGVFDS2861ILHL",
"aliases": [
"igvf:corces_measurementSet_X013_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0180AWWR/",
"accession": "IGVFDS0180AWWR",
"aliases": [
"igvf:corces_measurementSet_X013_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6429ARGY/",
"accession": "IGVFDS6429ARGY",
"aliases": [
"igvf:corces_measurementSet_X013_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7440FKID/",
"accession": "IGVFDS7440FKID",
"aliases": [
"igvf:corces_measurementSet_X013_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0172CONO/",
"accession": "IGVFDS0172CONO",
"aliases": [
"igvf:corces_measurementSet_X013_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9863NLYD/",
"accession": "IGVFDS9863NLYD",
"aliases": [
"igvf:corces_measurementSet_X013_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9132NRCN/",
"accession": "IGVFDS9132NRCN",
"aliases": [
"igvf:corces_measurementSet_X013_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6917SPVC/",
"accession": "IGVFDS6917SPVC",
"aliases": [
"igvf:corces_measurementSet_X013_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0926BXUA/",
"accession": "IGVFDS0926BXUA",
"aliases": [
"igvf:corces_measurementSet_X013_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9853NWOP/",
"accession": "IGVFDS9853NWOP",
"aliases": [
"igvf:corces_measurementSet_X013_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3262PRTX/",
"accession": "IGVFDS3262PRTX",
"aliases": [
"igvf:corces_measurementSet_X013_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6854HTWJ/",
"accession": "IGVFDS6854HTWJ",
"aliases": [
"igvf:corces_measurementSet_X013_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5076YZXC/",
"accession": "IGVFDS5076YZXC",
"aliases": [
"igvf:corces_measurementSet_X013_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0911QBRM/",
"accession": "IGVFDS0911QBRM",
"aliases": [
"igvf:corces_measurementSet_RP024_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6965XCFR/",
"accession": "IGVFDS6965XCFR",
"aliases": [
"igvf:corces_measurementSet_RP024_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2903IZSU/",
"accession": "IGVFDS2903IZSU",
"aliases": [
"igvf:corces_measurementSet_RP024_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7104BYEI/",
"accession": "IGVFDS7104BYEI",
"aliases": [
"igvf:corces_measurementSet_RP024_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6834GIYR/",
"accession": "IGVFDS6834GIYR",
"aliases": [
"igvf:corces_measurementSet_RP024_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8079TJID/",
"accession": "IGVFDS8079TJID",
"aliases": [
"igvf:corces_measurementSet_RP024_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7629BTQC/",
"accession": "IGVFDS7629BTQC",
"aliases": [
"igvf:corces_measurementSet_RP024_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6835ATJK/",
"accession": "IGVFDS6835ATJK",
"aliases": [
"igvf:corces_measurementSet_RP024_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 83,
"lower_bound_age_in_hours": 727080,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM6042BRFE/",
"accession": "IGVFSM6042BRFE",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0356ZQLC/",
"accession": "IGVFSM0356ZQLC",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM5169WCIH/",
"accession": "IGVFSM5169WCIH",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4906REGO/",
"accession": "IGVFSM4906REGO",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM5754ELBV/",
"accession": "IGVFSM5754ELBV",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2380OLTQ/",
"accession": "IGVFSM2380OLTQ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4418WKMH/",
"accession": "IGVFSM4418WKMH",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8000GFWF/",
"accession": "IGVFSM8000GFWF",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3515JFEY/",
"accession": "IGVFSM3515JFEY",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2596KVVR/",
"accession": "IGVFSM2596KVVR",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2219CEMB/",
"accession": "IGVFSM2219CEMB",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4734YTAT/",
"accession": "IGVFSM4734YTAT",
"status": "preview"
}
],
"origin_of": [],
"parts": [],
"pmi": 120,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy",
"taxa": "Homo sapiens",
"upper_bound_age": 83,
"upper_bound_age_in_hours": 727080,
"uuid": "9b0a9ade-d522-49b6-9d96-d920089328cc",
"virtual": false
}