middle temporal gyrus — IGVFSM1461YXJR

{
    "@context": "/terms/",
    "@id": "/tissues/IGVFSM1461YXJR/",
    "@type": [
        "Tissue",
        "Biosample",
        "Sample",
        "Item"
    ],
    "accession": "IGVFSM1461YXJR",
    "age": "78",
    "age_units": "year",
    "aliases": [
        "igvf:corces_tissue_BANN0215_MTG_B1"
    ],
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Preview tissue [IGVFSM1461YXJR](/tissues/IGVFSM1461YXJR/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/tissues/IGVFSM1461YXJR/"
            },
            {
                "category": "missing CCF ID",
                "detail": "Tissue [IGVFSM1461YXJR](/tissues/IGVFSM1461YXJR/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_tissue_ccf_id",
                "path": "/tissues/IGVFSM1461YXJR/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "classifications": [
        "tissue"
    ],
    "creation_timestamp": "2025-03-19T12:58:00.304293+00:00",
    "date_obtained": "2023-01-04",
    "disease_terms": [
        {
            "@id": "/phenotype-terms/DOID_14330/",
            "status": "in progress",
            "term_name": "Parkinson's disease"
        }
    ],
    "donors": [
        {
            "@id": "/human-donors/IGVFDO1302YEPX/",
            "accession": "IGVFDO1302YEPX",
            "ethnicities": [
                "European"
            ],
            "status": "preview"
        }
    ],
    "file_sets": [
        {
            "@id": "/measurement-sets/IGVFDS6861FWGU/",
            "accession": "IGVFDS6861FWGU",
            "aliases": [
                "igvf:corces_measurementSet_X026_G2_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS6474VMQQ/",
            "accession": "IGVFDS6474VMQQ",
            "aliases": [
                "igvf:corces_measurementSet_X026_G2_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS2301ZZAH/",
            "accession": "IGVFDS2301ZZAH",
            "aliases": [
                "igvf:corces_measurementSet_X026_G1_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS8030HFXX/",
            "accession": "IGVFDS8030HFXX",
            "aliases": [
                "igvf:corces_measurementSet_X026_G1_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS1306ZCOQ/",
            "accession": "IGVFDS1306ZCOQ",
            "aliases": [
                "igvf:corces_measurementSet_X026_G6_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS3474QGOJ/",
            "accession": "IGVFDS3474QGOJ",
            "aliases": [
                "igvf:corces_measurementSet_X026_G6_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS7798YHKL/",
            "accession": "IGVFDS7798YHKL",
            "aliases": [
                "igvf:corces_measurementSet_X026_G5_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS1685FPWP/",
            "accession": "IGVFDS1685FPWP",
            "aliases": [
                "igvf:corces_measurementSet_X026_G5_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS3216QPMN/",
            "accession": "IGVFDS3216QPMN",
            "aliases": [
                "igvf:corces_measurementSet_X026_G8_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS2545WGKB/",
            "accession": "IGVFDS2545WGKB",
            "aliases": [
                "igvf:corces_measurementSet_X026_G8_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS2763CAIE/",
            "accession": "IGVFDS2763CAIE",
            "aliases": [
                "igvf:corces_measurementSet_X026_G3_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS2819XOSD/",
            "accession": "IGVFDS2819XOSD",
            "aliases": [
                "igvf:corces_measurementSet_X026_G3_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS4050XKFP/",
            "accession": "IGVFDS4050XKFP",
            "aliases": [
                "igvf:corces_measurementSet_X026_G4_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS2106EAOR/",
            "accession": "IGVFDS2106EAOR",
            "aliases": [
                "igvf:corces_measurementSet_X026_G4_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS0932PWSD/",
            "accession": "IGVFDS0932PWSD",
            "aliases": [
                "igvf:corces_measurementSet_X026_G7_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS9966TLZG/",
            "accession": "IGVFDS9966TLZG",
            "aliases": [
                "igvf:corces_measurementSet_X026_G7_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS2943LQHU/",
            "accession": "IGVFDS2943LQHU",
            "aliases": [
                "igvf:corces_measurementSet_RP014_G3_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS3707VRFM/",
            "accession": "IGVFDS3707VRFM",
            "aliases": [
                "igvf:corces_measurementSet_RP014_G3_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS7788KKVV/",
            "accession": "IGVFDS7788KKVV",
            "aliases": [
                "igvf:corces_measurementSet_RP014_G2_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS3071BBZO/",
            "accession": "IGVFDS3071BBZO",
            "aliases": [
                "igvf:corces_measurementSet_RP014_G2_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS3473OBBZ/",
            "accession": "IGVFDS3473OBBZ",
            "aliases": [
                "igvf:corces_measurementSet_RP014_G8_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS5184YEZB/",
            "accession": "IGVFDS5184YEZB",
            "aliases": [
                "igvf:corces_measurementSet_RP014_G8_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS5508ONPS/",
            "accession": "IGVFDS5508ONPS",
            "aliases": [
                "igvf:corces_measurementSet_RP014_G4_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS0058HQMM/",
            "accession": "IGVFDS0058HQMM",
            "aliases": [
                "igvf:corces_measurementSet_RP014_G4_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS3802KJSR/",
            "accession": "IGVFDS3802KJSR",
            "aliases": [
                "igvf:corces_measurementSet_RP014_G5_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS6353IHVX/",
            "accession": "IGVFDS6353IHVX",
            "aliases": [
                "igvf:corces_measurementSet_RP014_G5_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS9599ZHWG/",
            "accession": "IGVFDS9599ZHWG",
            "aliases": [
                "igvf:corces_measurementSet_RP014_G1_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS4610DVCB/",
            "accession": "IGVFDS4610DVCB",
            "aliases": [
                "igvf:corces_measurementSet_RP014_G1_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS0957VZJU/",
            "accession": "IGVFDS0957VZJU",
            "aliases": [
                "igvf:corces_measurementSet_RP014_G6_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS3998OHPZ/",
            "accession": "IGVFDS3998OHPZ",
            "aliases": [
                "igvf:corces_measurementSet_RP014_G6_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS6041FJHB/",
            "accession": "IGVFDS6041FJHB",
            "aliases": [
                "igvf:corces_measurementSet_RP014_G7_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS2731RLBA/",
            "accession": "IGVFDS2731RLBA",
            "aliases": [
                "igvf:corces_measurementSet_RP014_G7_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        }
    ],
    "institutional_certificates": [
        {
            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
            "certificate_identifier": "IP115-05",
            "controlled_access": false,
            "status": "in progress"
        }
    ],
    "lab": {
        "@id": "/labs/ryan-corces/",
        "title": "Ryan Corces, Gladstone Institute UCSF"
    },
    "lower_bound_age": 78,
    "lower_bound_age_in_hours": 683280,
    "multiplexed_in": [
        {
            "@id": "/multiplexed-samples/IGVFSM8905KCPF/",
            "accession": "IGVFSM8905KCPF",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM7524IPCT/",
            "accession": "IGVFSM7524IPCT",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM5730MFMA/",
            "accession": "IGVFSM5730MFMA",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM1625HXVD/",
            "accession": "IGVFSM1625HXVD",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM4683YJRI/",
            "accession": "IGVFSM4683YJRI",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM0949TONL/",
            "accession": "IGVFSM0949TONL",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM8033EKDR/",
            "accession": "IGVFSM8033EKDR",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM8499MYWL/",
            "accession": "IGVFSM8499MYWL",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM4901QTFI/",
            "accession": "IGVFSM4901QTFI",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM7335HESV/",
            "accession": "IGVFSM7335HESV",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM7659CCOT/",
            "accession": "IGVFSM7659CCOT",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM8048XYHR/",
            "accession": "IGVFSM8048XYHR",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM5142KRLD/",
            "accession": "IGVFSM5142KRLD",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM3192MEUT/",
            "accession": "IGVFSM3192MEUT",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM8298LTTJ/",
            "accession": "IGVFSM8298LTTJ",
            "status": "preview"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM0496VQZI/",
            "accession": "IGVFSM0496VQZI",
            "status": "preview"
        }
    ],
    "origin_of": [],
    "part_of": "/tissues/IGVFSM5503ULQR/",
    "parts": [],
    "pmi": 210,
    "pmi_units": "minute",
    "pooled_in": [],
    "preservation_method": "flash-freezing",
    "protocols": [
        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
    ],
    "sample_terms": [
        {
            "@id": "/sample-terms/UBERON_0002771/",
            "status": "preview",
            "term_name": "middle temporal gyrus"
        }
    ],
    "schema_version": "21",
    "sex": "female",
    "sorted_fractions": [],
    "sources": [
        {
            "@id": "/sources/banner-health/",
            "status": "released",
            "title": "Banner Health"
        }
    ],
    "status": "preview",
    "submitted_by": {
        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
        "title": "Ryan Corces"
    },
    "summary": "Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease",
    "taxa": "Homo sapiens",
    "upper_bound_age": 78,
    "upper_bound_age_in_hours": 683280,
    "uuid": "5fb16212-fa8a-4f3c-a267-49a5c647b5b9",
    "virtual": false
}