brain — IGVFSM1149LLIF

released
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM1149LLIF/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM1149LLIF",
11    "age": "unknown",
12    "aliases": [
13        "buenrostro-bernstein:BioSam 4965_SS-PKR 432"
14    ],
15    "audit": {
16        "INTERNAL_ACTION": [
17            {
18                "category": "missing publication",
19                "detail": "Tissue [IGVFSM1149LLIF](/tissues/IGVFSM1149LLIF/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
20                "level": 30,
21                "level_name": "INTERNAL_ACTION",
22                "name": "audit_sample_missing_publication",
23                "path": "/tissues/IGVFSM1149LLIF/"
24            }
25        ],
26        "WARNING": [
27            {
28                "category": "missing age",
29                "detail": "Tissue [IGVFSM1149LLIF](/tissues/IGVFSM1149LLIF/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
30                "level": 40,
31                "level_name": "WARNING",
32                "name": "audit_biosample_age",
33                "path": "/tissues/IGVFSM1149LLIF/"
34            }
35        ]
36    },
37    "award": {
38        "@id": "/awards/HG011986/",
39        "component": "mapping"
40    },
41    "cellular_sub_pool": "SS-PKR 432",
42    "classifications": [
43        "tissue"
44    ],
45    "creation_timestamp": "2025-03-09T15:51:35.070661+00:00",
46    "description": "Mouse Brain",
47    "donors": [
48        {
49            "@id": "/rodent-donors/IGVFDO9446AKYF/",
50            "accession": "IGVFDO9446AKYF",
51            "status": "released",
52            "strain": "C57BL/6"
53        }
54    ],
55    "file_sets": [
56        {
57            "@id": "/measurement-sets/IGVFDS9151XHFL/",
58            "accession": "IGVFDS9151XHFL",
59            "aliases": [
60                "buenrostro-bernstein:scRNA Lib 607"
61            ],
62            "file_set_type": "experimental data",
63            "lab": {
64                "title": "Jason Buenrostro, Broad"
65            },
66            "preferred_assay_title": "SHARE-seq",
67            "status": "released",
68            "summary": "single-cell RNA sequencing assay (SHARE-seq)"
69        },
70        {
71            "@id": "/measurement-sets/IGVFDS3368OEWN/",
72            "accession": "IGVFDS3368OEWN",
73            "aliases": [
74                "buenrostro-bernstein:scATAC Lib 1266"
75            ],
76            "file_set_type": "experimental data",
77            "lab": {
78                "title": "Jason Buenrostro, Broad"
79            },
80            "preferred_assay_title": "SHARE-seq",
81            "status": "released",
82            "summary": "single-cell ATAC-seq (SHARE-seq)"
83        },
84        {
85            "@id": "/analysis-sets/IGVFDS7496XAWN/",
86            "accession": "IGVFDS7496XAWN",
87            "aliases": [
88                "buenrostro-bernstein:AnalysisSet_BioSam-4965_SS-PKR-432"
89            ],
90            "file_set_type": "intermediate analysis",
91            "lab": {
92                "title": "Jason Buenrostro, Broad"
93            },
94            "status": "in progress",
95            "summary": "SHARE-seq: alignments, fragments, index, sparse gene count matrix"
96        }
97    ],
98    "institutional_certificates": [],
99    "lab": {
100        "@id": "/labs/jason-buenrostro/",
101        "title": "Jason Buenrostro, Broad"
102    },
103    "multiplexed_in": [],
104    "origin_of": [],
105    "part_of": "/tissues/IGVFSM5971QYEZ/",
106    "parts": [],
107    "pooled_in": [],
108    "release_timestamp": "2025-03-28T21:22:27.038637+00:00",
109    "sample_terms": [
110        {
111            "@id": "/sample-terms/UBERON_0000955/",
112            "status": "released",
113            "term_name": "brain"
114        }
115    ],
116    "schema_version": "21",
117    "sex": "unspecified",
118    "sorted_fractions": [],
119    "sources": [
120        {
121            "@id": "/sources/transnetyx/",
122            "status": "released",
123            "title": "Transnetyx"
124        }
125    ],
126    "status": "released",
127    "submitted_by": {
128        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
129        "title": "Siddarth Wekhande"
130    },
131    "summary": "Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 432)",
132    "taxa": "Mus musculus",
133    "uuid": "dc7a246d-3874-4441-b4bd-a3c0f6df0089",
134    "virtual": false
135}