posterior cingulate gyrus — IGVFSM0898YBHT

preview
1{
2    "@context": "/terms/",
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4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM0898YBHT",
11    "age": "78",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN0325_CING"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM0898YBHT](/tissues/IGVFSM0898YBHT/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM0898YBHT/"
25            },
26            {
27                "category": "missing CCF ID",
28                "detail": "Tissue [IGVFSM0898YBHT](/tissues/IGVFSM0898YBHT/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_tissue_ccf_id",
32                "path": "/tissues/IGVFSM0898YBHT/"
33            }
34        ]
35    },
36    "award": {
37        "@id": "/awards/HG012076/",
38        "component": "mapping"
39    },
40    "classifications": [
41        "tissue"
42    ],
43    "creation_timestamp": "2025-03-19T04:14:08.787358+00:00",
44    "date_obtained": "2023-02-22",
45    "disease_terms": [
46        {
47            "@id": "/phenotype-terms/DOID_14330/",
48            "status": "in progress",
49            "term_name": "Parkinson's disease"
50        }
51    ],
52    "donors": [
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54            "@id": "/human-donors/IGVFDO4108VCBA/",
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72            },
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75            "summary": "single-nucleus ATAC-seq (10x multiome)"
76        },
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183                "title": "Ryan Corces, Gladstone Institute UCSF"
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225                "title": "Ryan Corces, Gladstone Institute UCSF"
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239                "title": "Ryan Corces, Gladstone Institute UCSF"
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243            "summary": "single-nucleus ATAC-seq (10x multiome)"
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253                "title": "Ryan Corces, Gladstone Institute UCSF"
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267                "title": "Ryan Corces, Gladstone Institute UCSF"
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295                "title": "Ryan Corces, Gladstone Institute UCSF"
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323                "title": "Ryan Corces, Gladstone Institute UCSF"
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351                "title": "Ryan Corces, Gladstone Institute UCSF"
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593            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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622        },
623        {
624            "@id": "/measurement-sets/IGVFDS6656GDSH/",
625            "accession": "IGVFDS6656GDSH",
626            "aliases": [
627                "igvf:corces_measurementSet_RP030_G4_RNA"
628            ],
629            "file_set_type": "experimental data",
630            "lab": {
631                "title": "Ryan Corces, Gladstone Institute UCSF"
632            },
633            "preferred_assay_title": "10x multiome",
634            "status": "preview",
635            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
636        },
637        {
638            "@id": "/measurement-sets/IGVFDS4767ISCA/",
639            "accession": "IGVFDS4767ISCA",
640            "aliases": [
641                "igvf:corces_measurementSet_RP030_G4_ATAC"
642            ],
643            "file_set_type": "experimental data",
644            "lab": {
645                "title": "Ryan Corces, Gladstone Institute UCSF"
646            },
647            "preferred_assay_title": "10x multiome",
648            "status": "preview",
649            "summary": "single-nucleus ATAC-seq (10x multiome)"
650        },
651        {
652            "@id": "/measurement-sets/IGVFDS8187GTTC/",
653            "accession": "IGVFDS8187GTTC",
654            "aliases": [
655                "igvf:corces_measurementSet_RP030_G8_ATAC"
656            ],
657            "file_set_type": "experimental data",
658            "lab": {
659                "title": "Ryan Corces, Gladstone Institute UCSF"
660            },
661            "preferred_assay_title": "10x multiome",
662            "status": "preview",
663            "summary": "single-nucleus ATAC-seq (10x multiome)"
664        },
665        {
666            "@id": "/measurement-sets/IGVFDS5164BIQZ/",
667            "accession": "IGVFDS5164BIQZ",
668            "aliases": [
669                "igvf:corces_measurementSet_RP030_G8_RNA"
670            ],
671            "file_set_type": "experimental data",
672            "lab": {
673                "title": "Ryan Corces, Gladstone Institute UCSF"
674            },
675            "preferred_assay_title": "10x multiome",
676            "status": "preview",
677            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
678        },
679        {
680            "@id": "/measurement-sets/IGVFDS7419QTMU/",
681            "accession": "IGVFDS7419QTMU",
682            "aliases": [
683                "igvf:corces_measurementSet_RP030_G5_ATAC"
684            ],
685            "file_set_type": "experimental data",
686            "lab": {
687                "title": "Ryan Corces, Gladstone Institute UCSF"
688            },
689            "preferred_assay_title": "10x multiome",
690            "status": "preview",
691            "summary": "single-nucleus ATAC-seq (10x multiome)"
692        },
693        {
694            "@id": "/measurement-sets/IGVFDS3906FOFG/",
695            "accession": "IGVFDS3906FOFG",
696            "aliases": [
697                "igvf:corces_measurementSet_RP030_G5_RNA"
698            ],
699            "file_set_type": "experimental data",
700            "lab": {
701                "title": "Ryan Corces, Gladstone Institute UCSF"
702            },
703            "preferred_assay_title": "10x multiome",
704            "status": "preview",
705            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
706        },
707        {
708            "@id": "/measurement-sets/IGVFDS3033LUWO/",
709            "accession": "IGVFDS3033LUWO",
710            "aliases": [
711                "igvf:corces_measurementSet_RP030_G2_ATAC"
712            ],
713            "file_set_type": "experimental data",
714            "lab": {
715                "title": "Ryan Corces, Gladstone Institute UCSF"
716            },
717            "preferred_assay_title": "10x multiome",
718            "status": "preview",
719            "summary": "single-nucleus ATAC-seq (10x multiome)"
720        },
721        {
722            "@id": "/measurement-sets/IGVFDS6557TBMR/",
723            "accession": "IGVFDS6557TBMR",
724            "aliases": [
725                "igvf:corces_measurementSet_RP030_G2_RNA"
726            ],
727            "file_set_type": "experimental data",
728            "lab": {
729                "title": "Ryan Corces, Gladstone Institute UCSF"
730            },
731            "preferred_assay_title": "10x multiome",
732            "status": "preview",
733            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
734        }
735    ],
736    "institutional_certificates": [
737        {
738            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
739            "certificate_identifier": "IP115-05",
740            "controlled_access": false,
741            "status": "in progress"
742        }
743    ],
744    "lab": {
745        "@id": "/labs/ryan-corces/",
746        "title": "Ryan Corces, Gladstone Institute UCSF"
747    },
748    "lower_bound_age": 78,
749    "lower_bound_age_in_hours": 683280,
750    "multiplexed_in": [
751        {
752            "@id": "/multiplexed-samples/IGVFSM3718ZLPR/",
753            "accession": "IGVFSM3718ZLPR",
754            "status": "preview"
755        },
756        {
757            "@id": "/multiplexed-samples/IGVFSM1109QIDV/",
758            "accession": "IGVFSM1109QIDV",
759            "status": "preview"
760        },
761        {
762            "@id": "/multiplexed-samples/IGVFSM7243MOJZ/",
763            "accession": "IGVFSM7243MOJZ",
764            "status": "preview"
765        },
766        {
767            "@id": "/multiplexed-samples/IGVFSM1867DNXU/",
768            "accession": "IGVFSM1867DNXU",
769            "status": "preview"
770        },
771        {
772            "@id": "/multiplexed-samples/IGVFSM9187MAHV/",
773            "accession": "IGVFSM9187MAHV",
774            "status": "preview"
775        },
776        {
777            "@id": "/multiplexed-samples/IGVFSM6104DPZN/",
778            "accession": "IGVFSM6104DPZN",
779            "status": "preview"
780        },
781        {
782            "@id": "/multiplexed-samples/IGVFSM7690RNGC/",
783            "accession": "IGVFSM7690RNGC",
784            "status": "preview"
785        },
786        {
787            "@id": "/multiplexed-samples/IGVFSM7148SYPE/",
788            "accession": "IGVFSM7148SYPE",
789            "status": "preview"
790        },
791        {
792            "@id": "/multiplexed-samples/IGVFSM1576QCMO/",
793            "accession": "IGVFSM1576QCMO",
794            "status": "preview"
795        },
796        {
797            "@id": "/multiplexed-samples/IGVFSM5080SUXQ/",
798            "accession": "IGVFSM5080SUXQ",
799            "status": "preview"
800        },
801        {
802            "@id": "/multiplexed-samples/IGVFSM2861OAVH/",
803            "accession": "IGVFSM2861OAVH",
804            "status": "preview"
805        },
806        {
807            "@id": "/multiplexed-samples/IGVFSM1787GSWB/",
808            "accession": "IGVFSM1787GSWB",
809            "status": "preview"
810        },
811        {
812            "@id": "/multiplexed-samples/IGVFSM2972NNHQ/",
813            "accession": "IGVFSM2972NNHQ",
814            "status": "preview"
815        },
816        {
817            "@id": "/multiplexed-samples/IGVFSM5420ZYPI/",
818            "accession": "IGVFSM5420ZYPI",
819            "status": "preview"
820        },
821        {
822            "@id": "/multiplexed-samples/IGVFSM8342TFWF/",
823            "accession": "IGVFSM8342TFWF",
824            "status": "preview"
825        },
826        {
827            "@id": "/multiplexed-samples/IGVFSM7640TBFV/",
828            "accession": "IGVFSM7640TBFV",
829            "status": "preview"
830        },
831        {
832            "@id": "/multiplexed-samples/IGVFSM3819ZCMN/",
833            "accession": "IGVFSM3819ZCMN",
834            "status": "preview"
835        },
836        {
837            "@id": "/multiplexed-samples/IGVFSM7012MRMQ/",
838            "accession": "IGVFSM7012MRMQ",
839            "status": "preview"
840        },
841        {
842            "@id": "/multiplexed-samples/IGVFSM6292QYDO/",
843            "accession": "IGVFSM6292QYDO",
844            "status": "preview"
845        },
846        {
847            "@id": "/multiplexed-samples/IGVFSM3536QCVJ/",
848            "accession": "IGVFSM3536QCVJ",
849            "status": "preview"
850        },
851        {
852            "@id": "/multiplexed-samples/IGVFSM0083TWIE/",
853            "accession": "IGVFSM0083TWIE",
854            "status": "preview"
855        },
856        {
857            "@id": "/multiplexed-samples/IGVFSM3517DKCV/",
858            "accession": "IGVFSM3517DKCV",
859            "status": "preview"
860        },
861        {
862            "@id": "/multiplexed-samples/IGVFSM8257KBTQ/",
863            "accession": "IGVFSM8257KBTQ",
864            "status": "preview"
865        },
866        {
867            "@id": "/multiplexed-samples/IGVFSM7720FVJI/",
868            "accession": "IGVFSM7720FVJI",
869            "status": "preview"
870        }
871    ],
872    "origin_of": [],
873    "parts": [],
874    "pmi": 150,
875    "pmi_units": "minute",
876    "pooled_in": [],
877    "preservation_method": "flash-freezing",
878    "protocols": [
879        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
880    ],
881    "sample_terms": [
882        {
883            "@id": "/sample-terms/UBERON_0002740/",
884            "status": "preview",
885            "term_name": "posterior cingulate gyrus"
886        }
887    ],
888    "schema_version": "21",
889    "sex": "male",
890    "sorted_fractions": [],
891    "sources": [
892        {
893            "@id": "/sources/banner-health/",
894            "status": "released",
895            "title": "Banner Health"
896        }
897    ],
898    "status": "preview",
899    "submitted_by": {
900        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
901        "title": "Ryan Corces"
902    },
903    "summary": "Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease",
904    "taxa": "Homo sapiens",
905    "upper_bound_age": 78,
906    "upper_bound_age_in_hours": 683280,
907    "uuid": "aac36cb0-f455-4b37-8aa1-aeafa24c2693",
908    "virtual": false
909}