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putamen — IGVFSM0743LGGL
putamen — IGVFSM0743LGGL
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Summary
Homo sapiens (male, 74 years) putamen tissue associated with Parkinson's disease
Sample Terms
putamen
Sex
male
Age
74 years
Post-mortem Interval
205 minutes
Preservation Method
flash-freezing
Taxa
Homo sapiens
Sources
banner-health
Date Harvested
January 24, 2023
Aliases
igvf:corces_tissue_BANN1234_PUT
Protocols
https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO7051PRHR
igvf:corces_donor_BANN1234
male
Homo sapiens
File Sets
48 items
1
2
3
4
5
Accession
Summary
Aliases
Lab
IGVFDS0247BVMI
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP006_G5_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS0299PZQV
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP006_G7_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS0585JEMM
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP006_G2_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS0646FGSI
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP006_G7_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS0682HDZQ
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP029_G5_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS0688NEEC
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP029_G8_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS0802QULQ
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP006_G4_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS0818IGBJ
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X030_G4_RNA
Ryan Corces, Gladstone Institute UCSF
IGVFDS1260SOEX
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP029_G6_ATAC
Ryan Corces, Gladstone Institute UCSF
IGVFDS1277OGTW
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_X030_G7_ATAC
Ryan Corces, Gladstone Institute UCSF
Multiplexed In Samples
24 items
1
2
3
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM0019MOAR
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 74 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) posterior cingulate gyrus tissue; ... and 6 more samples
IGVFSM0177WEBY
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 60 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples
IGVFSM0722WVNE
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 60 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples
IGVFSM1252DLAM
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 74 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) posterior cingulate gyrus tissue; ... and 6 more samples
IGVFSM1890PIKY
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 60 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples
IGVFSM2378UJCJ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 60 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples
IGVFSM2738AFKG
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 74 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) posterior cingulate gyrus tissue; ... and 6 more samples
IGVFSM2981VRFX
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
IGVFSM3715NVPJ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
IGVFSM3839YDOW
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 74 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) posterior cingulate gyrus tissue; ... and 6 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF