{
"@context": "/terms/",
"@id": "/tissues/IGVFSM0716DQDK/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0716DQDK",
"age": "85",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN2005_CING"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM0716DQDK](/tissues/IGVFSM0716DQDK/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM0716DQDK/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM0716DQDK](/tissues/IGVFSM0716DQDK/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM0716DQDK/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T04:09:51.393029+00:00",
"date_obtained": "2022-11-17",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO7109IWDJ/",
"accession": "IGVFDO7109IWDJ",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS2859PJGU/",
"accession": "IGVFDS2859PJGU",
"aliases": [
"igvf:corces_measurementSet_X017_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9895NTUE/",
"accession": "IGVFDS9895NTUE",
"aliases": [
"igvf:corces_measurementSet_X017_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1470SNNV/",
"accession": "IGVFDS1470SNNV",
"aliases": [
"igvf:corces_measurementSet_X017_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3530SKJW/",
"accession": "IGVFDS3530SKJW",
"aliases": [
"igvf:corces_measurementSet_X017_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3420XHWA/",
"accession": "IGVFDS3420XHWA",
"aliases": [
"igvf:corces_measurementSet_X017_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6822SLYX/",
"accession": "IGVFDS6822SLYX",
"aliases": [
"igvf:corces_measurementSet_X017_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8365NOXL/",
"accession": "IGVFDS8365NOXL",
"aliases": [
"igvf:corces_measurementSet_X017_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3772GBWA/",
"accession": "IGVFDS3772GBWA",
"aliases": [
"igvf:corces_measurementSet_X017_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4396WXHV/",
"accession": "IGVFDS4396WXHV",
"aliases": [
"igvf:corces_measurementSet_X017_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3032MJTN/",
"accession": "IGVFDS3032MJTN",
"aliases": [
"igvf:corces_measurementSet_X017_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4030FQTQ/",
"accession": "IGVFDS4030FQTQ",
"aliases": [
"igvf:corces_measurementSet_X017_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3128JSFB/",
"accession": "IGVFDS3128JSFB",
"aliases": [
"igvf:corces_measurementSet_X017_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3353NTQR/",
"accession": "IGVFDS3353NTQR",
"aliases": [
"igvf:corces_measurementSet_X017_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3610VOSK/",
"accession": "IGVFDS3610VOSK",
"aliases": [
"igvf:corces_measurementSet_X017_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4454ALSY/",
"accession": "IGVFDS4454ALSY",
"aliases": [
"igvf:corces_measurementSet_X017_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9071IVDP/",
"accession": "IGVFDS9071IVDP",
"aliases": [
"igvf:corces_measurementSet_X017_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5992AUMA/",
"accession": "IGVFDS5992AUMA",
"aliases": [
"igvf:corces_measurementSet_RP027_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6226RCRF/",
"accession": "IGVFDS6226RCRF",
"aliases": [
"igvf:corces_measurementSet_RP027_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6778JTHZ/",
"accession": "IGVFDS6778JTHZ",
"aliases": [
"igvf:corces_measurementSet_RP017_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5441GNGR/",
"accession": "IGVFDS5441GNGR",
"aliases": [
"igvf:corces_measurementSet_RP017_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0865NCHS/",
"accession": "IGVFDS0865NCHS",
"aliases": [
"igvf:corces_measurementSet_RP027_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9441JIJG/",
"accession": "IGVFDS9441JIJG",
"aliases": [
"igvf:corces_measurementSet_RP027_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3192IDFV/",
"accession": "IGVFDS3192IDFV",
"aliases": [
"igvf:corces_measurementSet_RP017_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6469UTWA/",
"accession": "IGVFDS6469UTWA",
"aliases": [
"igvf:corces_measurementSet_RP017_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6703RFLO/",
"accession": "IGVFDS6703RFLO",
"aliases": [
"igvf:corces_measurementSet_RP017_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3632OOWJ/",
"accession": "IGVFDS3632OOWJ",
"aliases": [
"igvf:corces_measurementSet_RP017_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9366EKYM/",
"accession": "IGVFDS9366EKYM",
"aliases": [
"igvf:corces_measurementSet_RP017_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9780HOAQ/",
"accession": "IGVFDS9780HOAQ",
"aliases": [
"igvf:corces_measurementSet_RP017_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1757WXOT/",
"accession": "IGVFDS1757WXOT",
"aliases": [
"igvf:corces_measurementSet_RP027_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3899HTRC/",
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"aliases": [
"igvf:corces_measurementSet_RP027_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9087SPJI/",
"accession": "IGVFDS9087SPJI",
"aliases": [
"igvf:corces_measurementSet_RP027_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9238GAGW/",
"accession": "IGVFDS9238GAGW",
"aliases": [
"igvf:corces_measurementSet_RP027_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5840XDFA/",
"accession": "IGVFDS5840XDFA",
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"igvf:corces_measurementSet_RP027_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6755WRHO/",
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"igvf:corces_measurementSet_RP027_G1_RNA"
],
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"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0324WVBM/",
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],
"file_set_type": "experimental data",
"lab": {
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},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9985YUZH/",
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],
"file_set_type": "experimental data",
"lab": {
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},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8780GGCL/",
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"aliases": [
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],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7811WDIP/",
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],
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"lab": {
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},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
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"aliases": [
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],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9615JMIK/",
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],
"file_set_type": "experimental data",
"lab": {
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},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
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"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
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"status": "in progress"
}
],
"lab": {
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"title": "Ryan Corces, Gladstone Institute UCSF"
},
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"lower_bound_age_in_hours": 744600,
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{
"@id": "/multiplexed-samples/IGVFSM6070GNPG/",
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"status": "preview"
},
{
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},
{
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},
{
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},
{
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},
{
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},
{
"@id": "/multiplexed-samples/IGVFSM0604ZSIQ/",
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},
{
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},
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},
{
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},
{
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},
{
"@id": "/multiplexed-samples/IGVFSM8995INHU/",
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},
{
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},
{
"@id": "/multiplexed-samples/IGVFSM6067ILMK/",
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"status": "preview"
},
{
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},
{
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"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM1803KRCW/",
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"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM5733CUKP/",
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"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9924QRZP/",
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},
{
"@id": "/multiplexed-samples/IGVFSM7204JWYU/",
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"status": "preview"
}
],
"origin_of": [],
"parts": [],
"pmi": 240,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002740/",
"status": "preview",
"term_name": "posterior cingulate gyrus"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease",
"taxa": "Homo sapiens",
"upper_bound_age": 85,
"upper_bound_age_in_hours": 744600,
"uuid": "a30a9675-4850-4c1f-b382-cb9b59166aea",
"virtual": false
}