{
"@context": "/terms/",
"@id": "/tissues/IGVFSM0684QJEK/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0684QJEK",
"age": "80",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN0129_CBL_B2"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM0684QJEK](/tissues/IGVFSM0684QJEK/) has in progress subobject phenotype term [DOID_9246](/phenotype-terms/DOID_9246/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM0684QJEK/"
},
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM0684QJEK](/tissues/IGVFSM0684QJEK/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM0684QJEK/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM0684QJEK](/tissues/IGVFSM0684QJEK/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM0684QJEK/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T12:59:17.647224+00:00",
"date_obtained": "2023-08-02",
"disease_terms": [
{
"@id": "/phenotype-terms/MONDO_0004975/",
"status": "released",
"term_name": "Alzheimer disease"
},
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO4191KJBR/",
"accession": "IGVFDO4191KJBR",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS4166GJEC/",
"accession": "IGVFDS4166GJEC",
"aliases": [
"igvf:corces_measurementSet_X051_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6820TDFJ/",
"accession": "IGVFDS6820TDFJ",
"aliases": [
"igvf:corces_measurementSet_X051_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1256KMVV/",
"accession": "IGVFDS1256KMVV",
"aliases": [
"igvf:corces_measurementSet_X051_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4074ZYTU/",
"accession": "IGVFDS4074ZYTU",
"aliases": [
"igvf:corces_measurementSet_X051_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9145ELFW/",
"accession": "IGVFDS9145ELFW",
"aliases": [
"igvf:corces_measurementSet_X051_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0177MBCS/",
"accession": "IGVFDS0177MBCS",
"aliases": [
"igvf:corces_measurementSet_X051_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5290TNAA/",
"accession": "IGVFDS5290TNAA",
"aliases": [
"igvf:corces_measurementSet_X051_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0061IXIC/",
"accession": "IGVFDS0061IXIC",
"aliases": [
"igvf:corces_measurementSet_X051_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9634KYPQ/",
"accession": "IGVFDS9634KYPQ",
"aliases": [
"igvf:corces_measurementSet_X051_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7944GANE/",
"accession": "IGVFDS7944GANE",
"aliases": [
"igvf:corces_measurementSet_X051_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7125LDPM/",
"accession": "IGVFDS7125LDPM",
"aliases": [
"igvf:corces_measurementSet_X051_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6134OWZE/",
"accession": "IGVFDS6134OWZE",
"aliases": [
"igvf:corces_measurementSet_X051_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4859WSNO/",
"accession": "IGVFDS4859WSNO",
"aliases": [
"igvf:corces_measurementSet_X051_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7525VXDZ/",
"accession": "IGVFDS7525VXDZ",
"aliases": [
"igvf:corces_measurementSet_X051_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1643RHII/",
"accession": "IGVFDS1643RHII",
"aliases": [
"igvf:corces_measurementSet_X051_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7924TAKU/",
"accession": "IGVFDS7924TAKU",
"aliases": [
"igvf:corces_measurementSet_X051_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 80,
"lower_bound_age_in_hours": 700800,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM6649IRWP/",
"accession": "IGVFSM6649IRWP",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM2530JHLD/",
"accession": "IGVFSM2530JHLD",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM7066LYTG/",
"accession": "IGVFSM7066LYTG",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9951NZWB/",
"accession": "IGVFSM9951NZWB",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9972OZUY/",
"accession": "IGVFSM9972OZUY",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3230QTIF/",
"accession": "IGVFSM3230QTIF",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM5596NTCY/",
"accession": "IGVFSM5596NTCY",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM8353OQSJ/",
"accession": "IGVFSM8353OQSJ",
"status": "preview"
}
],
"origin_of": [],
"part_of": "/tissues/IGVFSM3518FEWI/",
"parts": [],
"pmi": 200,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002129/",
"status": "preview",
"term_name": "cerebellar cortex"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 80 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy",
"taxa": "Homo sapiens",
"upper_bound_age": 80,
"upper_bound_age_in_hours": 700800,
"uuid": "1ce39e80-09cb-40d9-96a7-02f1c781f21e",
"virtual": false
}