posterior cingulate gyrus — IGVFSM0672XHOK

preview
1{
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4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
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11    "age": "79",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1063_CING"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing CCF ID",
20                "detail": "Tissue [IGVFSM0672XHOK](/tissues/IGVFSM0672XHOK/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_tissue_ccf_id",
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25            }
26        ]
27    },
28    "award": {
29        "@id": "/awards/HG012076/",
30        "component": "mapping"
31    },
32    "classifications": [
33        "tissue"
34    ],
35    "creation_timestamp": "2025-03-19T04:10:25.749969+00:00",
36    "date_obtained": "2022-12-05",
37    "donors": [
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59            "status": "preview",
60            "summary": "single-nucleus ATAC-seq (10x multiome)"
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116            "summary": "single-nucleus ATAC-seq (10x multiome)"
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126                "title": "Ryan Corces, Gladstone Institute UCSF"
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173        },
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210                "title": "Ryan Corces, Gladstone Institute UCSF"
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224                "title": "Ryan Corces, Gladstone Institute UCSF"
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228            "summary": "single-nucleus ATAC-seq (10x multiome)"
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238                "title": "Ryan Corces, Gladstone Institute UCSF"
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241            "status": "preview",
242            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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252                "title": "Ryan Corces, Gladstone Institute UCSF"
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266                "title": "Ryan Corces, Gladstone Institute UCSF"
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308                "title": "Ryan Corces, Gladstone Institute UCSF"
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322                "title": "Ryan Corces, Gladstone Institute UCSF"
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326            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
327        },
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336                "title": "Ryan Corces, Gladstone Institute UCSF"
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340            "summary": "single-nucleus ATAC-seq (10x multiome)"
341        },
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350                "title": "Ryan Corces, Gladstone Institute UCSF"
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354            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
355        },
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364                "title": "Ryan Corces, Gladstone Institute UCSF"
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368            "summary": "single-nucleus ATAC-seq (10x multiome)"
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378                "title": "Ryan Corces, Gladstone Institute UCSF"
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382            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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420                "title": "Ryan Corces, Gladstone Institute UCSF"
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434                "title": "Ryan Corces, Gladstone Institute UCSF"
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476                "title": "Ryan Corces, Gladstone Institute UCSF"
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480            "summary": "single-nucleus ATAC-seq (10x multiome)"
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494            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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504                "title": "Ryan Corces, Gladstone Institute UCSF"
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518                "title": "Ryan Corces, Gladstone Institute UCSF"
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546                "title": "Ryan Corces, Gladstone Institute UCSF"
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592            "summary": "single-nucleus ATAC-seq (10x multiome)"
593        },
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606            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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623            "@id": "/measurement-sets/IGVFDS9042EIOS/",
624            "accession": "IGVFDS9042EIOS",
625            "aliases": [
626                "igvf:corces_measurementSet_RP025_G6_RNA"
627            ],
628            "file_set_type": "experimental data",
629            "lab": {
630                "title": "Ryan Corces, Gladstone Institute UCSF"
631            },
632            "preferred_assay_title": "10x multiome",
633            "status": "preview",
634            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
635        },
636        {
637            "@id": "/measurement-sets/IGVFDS7965KZXZ/",
638            "accession": "IGVFDS7965KZXZ",
639            "aliases": [
640                "igvf:corces_measurementSet_RP025_G8_ATAC"
641            ],
642            "file_set_type": "experimental data",
643            "lab": {
644                "title": "Ryan Corces, Gladstone Institute UCSF"
645            },
646            "preferred_assay_title": "10x multiome",
647            "status": "preview",
648            "summary": "single-nucleus ATAC-seq (10x multiome)"
649        },
650        {
651            "@id": "/measurement-sets/IGVFDS6467CIOG/",
652            "accession": "IGVFDS6467CIOG",
653            "aliases": [
654                "igvf:corces_measurementSet_RP025_G8_RNA"
655            ],
656            "file_set_type": "experimental data",
657            "lab": {
658                "title": "Ryan Corces, Gladstone Institute UCSF"
659            },
660            "preferred_assay_title": "10x multiome",
661            "status": "preview",
662            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
663        },
664        {
665            "@id": "/measurement-sets/IGVFDS5424OKKO/",
666            "accession": "IGVFDS5424OKKO",
667            "aliases": [
668                "igvf:corces_measurementSet_RP025_G7_ATAC"
669            ],
670            "file_set_type": "experimental data",
671            "lab": {
672                "title": "Ryan Corces, Gladstone Institute UCSF"
673            },
674            "preferred_assay_title": "10x multiome",
675            "status": "preview",
676            "summary": "single-nucleus ATAC-seq (10x multiome)"
677        },
678        {
679            "@id": "/measurement-sets/IGVFDS5137LMUM/",
680            "accession": "IGVFDS5137LMUM",
681            "aliases": [
682                "igvf:corces_measurementSet_RP025_G7_RNA"
683            ],
684            "file_set_type": "experimental data",
685            "lab": {
686                "title": "Ryan Corces, Gladstone Institute UCSF"
687            },
688            "preferred_assay_title": "10x multiome",
689            "status": "preview",
690            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
691        },
692        {
693            "@id": "/measurement-sets/IGVFDS5320BHIT/",
694            "accession": "IGVFDS5320BHIT",
695            "aliases": [
696                "igvf:corces_measurementSet_RP025_G4_ATAC"
697            ],
698            "file_set_type": "experimental data",
699            "lab": {
700                "title": "Ryan Corces, Gladstone Institute UCSF"
701            },
702            "preferred_assay_title": "10x multiome",
703            "status": "preview",
704            "summary": "single-nucleus ATAC-seq (10x multiome)"
705        },
706        {
707            "@id": "/measurement-sets/IGVFDS2310NNOV/",
708            "accession": "IGVFDS2310NNOV",
709            "aliases": [
710                "igvf:corces_measurementSet_RP025_G4_RNA"
711            ],
712            "file_set_type": "experimental data",
713            "lab": {
714                "title": "Ryan Corces, Gladstone Institute UCSF"
715            },
716            "preferred_assay_title": "10x multiome",
717            "status": "preview",
718            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
719        }
720    ],
721    "institutional_certificates": [
722        {
723            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
724            "certificate_identifier": "IP115-05",
725            "controlled_access": false,
726            "status": "in progress"
727        }
728    ],
729    "lab": {
730        "@id": "/labs/ryan-corces/",
731        "title": "Ryan Corces, Gladstone Institute UCSF"
732    },
733    "lower_bound_age": 79,
734    "lower_bound_age_in_hours": 692040,
735    "multiplexed_in": [
736        {
737            "@id": "/multiplexed-samples/IGVFSM1610RAUV/",
738            "accession": "IGVFSM1610RAUV",
739            "status": "preview"
740        },
741        {
742            "@id": "/multiplexed-samples/IGVFSM8305BIVT/",
743            "accession": "IGVFSM8305BIVT",
744            "status": "preview"
745        },
746        {
747            "@id": "/multiplexed-samples/IGVFSM1412FFZX/",
748            "accession": "IGVFSM1412FFZX",
749            "status": "preview"
750        },
751        {
752            "@id": "/multiplexed-samples/IGVFSM4714AXPW/",
753            "accession": "IGVFSM4714AXPW",
754            "status": "preview"
755        },
756        {
757            "@id": "/multiplexed-samples/IGVFSM2684WPNY/",
758            "accession": "IGVFSM2684WPNY",
759            "status": "preview"
760        },
761        {
762            "@id": "/multiplexed-samples/IGVFSM3174JJEO/",
763            "accession": "IGVFSM3174JJEO",
764            "status": "preview"
765        },
766        {
767            "@id": "/multiplexed-samples/IGVFSM1357KOCB/",
768            "accession": "IGVFSM1357KOCB",
769            "status": "preview"
770        },
771        {
772            "@id": "/multiplexed-samples/IGVFSM0063BKTC/",
773            "accession": "IGVFSM0063BKTC",
774            "status": "preview"
775        },
776        {
777            "@id": "/multiplexed-samples/IGVFSM8767PGTT/",
778            "accession": "IGVFSM8767PGTT",
779            "status": "preview"
780        },
781        {
782            "@id": "/multiplexed-samples/IGVFSM4595ROAA/",
783            "accession": "IGVFSM4595ROAA",
784            "status": "preview"
785        },
786        {
787            "@id": "/multiplexed-samples/IGVFSM7927MDCD/",
788            "accession": "IGVFSM7927MDCD",
789            "status": "preview"
790        },
791        {
792            "@id": "/multiplexed-samples/IGVFSM8255WJLC/",
793            "accession": "IGVFSM8255WJLC",
794            "status": "preview"
795        },
796        {
797            "@id": "/multiplexed-samples/IGVFSM7329LEXT/",
798            "accession": "IGVFSM7329LEXT",
799            "status": "preview"
800        },
801        {
802            "@id": "/multiplexed-samples/IGVFSM7076WLCU/",
803            "accession": "IGVFSM7076WLCU",
804            "status": "preview"
805        },
806        {
807            "@id": "/multiplexed-samples/IGVFSM4020DOCK/",
808            "accession": "IGVFSM4020DOCK",
809            "status": "preview"
810        },
811        {
812            "@id": "/multiplexed-samples/IGVFSM7915KUKE/",
813            "accession": "IGVFSM7915KUKE",
814            "status": "preview"
815        },
816        {
817            "@id": "/multiplexed-samples/IGVFSM7939CAGT/",
818            "accession": "IGVFSM7939CAGT",
819            "status": "preview"
820        },
821        {
822            "@id": "/multiplexed-samples/IGVFSM4296CDRL/",
823            "accession": "IGVFSM4296CDRL",
824            "status": "preview"
825        },
826        {
827            "@id": "/multiplexed-samples/IGVFSM0036UTPF/",
828            "accession": "IGVFSM0036UTPF",
829            "status": "preview"
830        },
831        {
832            "@id": "/multiplexed-samples/IGVFSM4968PVUL/",
833            "accession": "IGVFSM4968PVUL",
834            "status": "preview"
835        },
836        {
837            "@id": "/multiplexed-samples/IGVFSM9856IYBQ/",
838            "accession": "IGVFSM9856IYBQ",
839            "status": "preview"
840        },
841        {
842            "@id": "/multiplexed-samples/IGVFSM6826DJHO/",
843            "accession": "IGVFSM6826DJHO",
844            "status": "preview"
845        },
846        {
847            "@id": "/multiplexed-samples/IGVFSM9062JOAG/",
848            "accession": "IGVFSM9062JOAG",
849            "status": "preview"
850        },
851        {
852            "@id": "/multiplexed-samples/IGVFSM5834DWZB/",
853            "accession": "IGVFSM5834DWZB",
854            "status": "preview"
855        }
856    ],
857    "origin_of": [],
858    "parts": [],
859    "pmi": 180,
860    "pmi_units": "minute",
861    "pooled_in": [],
862    "preservation_method": "flash-freezing",
863    "protocols": [
864        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
865    ],
866    "sample_terms": [
867        {
868            "@id": "/sample-terms/UBERON_0002740/",
869            "status": "preview",
870            "term_name": "posterior cingulate gyrus"
871        }
872    ],
873    "schema_version": "21",
874    "sex": "male",
875    "sorted_fractions": [],
876    "sources": [
877        {
878            "@id": "/sources/banner-health/",
879            "status": "released",
880            "title": "Banner Health"
881        }
882    ],
883    "status": "preview",
884    "submitted_by": {
885        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
886        "title": "Ryan Corces"
887    },
888    "summary": "Homo sapiens (male, 79 years) posterior cingulate gyrus tissue",
889    "taxa": "Homo sapiens",
890    "upper_bound_age": 79,
891    "upper_bound_age_in_hours": 692040,
892    "uuid": "773eb2c8-1075-44e5-b041-04d19edb3cc5",
893    "virtual": false
894}