cerebellar cortex — IGVFSM0656XWUJ

1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM0656XWUJ/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM0656XWUJ",
11    "age": "89",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN0341_CBL"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing CCF ID",
20                "detail": "Tissue [IGVFSM0656XWUJ](/tissues/IGVFSM0656XWUJ/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_tissue_ccf_id",
24                "path": "/tissues/IGVFSM0656XWUJ/"
25            }
26        ]
27    },
28    "award": {
29        "@id": "/awards/HG012076/",
30        "component": "mapping"
31    },
32    "classifications": [
33        "tissue"
34    ],
35    "creation_timestamp": "2025-03-19T04:09:18.533568+00:00",
36    "date_obtained": "2022-11-08",
37    "donors": [
38        {
39            "@id": "/human-donors/IGVFDO7754VJKM/",
40            "accession": "IGVFDO7754VJKM",
41            "ethnicities": [
42                "European"
43            ],
44            "status": "preview"
45        }
46    ],
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53            ],
54            "file_set_type": "experimental data",
55            "lab": {
56                "title": "Ryan Corces, Gladstone Institute UCSF"
57            },
58            "preferred_assay_title": "10x multiome",
59            "status": "preview",
60            "summary": "single-nucleus ATAC-seq (10x multiome)"
61        },
62        {
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64            "accession": "IGVFDS3718PAFU",
65            "aliases": [
66                "igvf:corces_measurementSet_X014_G7_RNA"
67            ],
68            "file_set_type": "experimental data",
69            "lab": {
70                "title": "Ryan Corces, Gladstone Institute UCSF"
71            },
72            "preferred_assay_title": "10x multiome",
73            "status": "preview",
74            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
75        },
76        {
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78            "accession": "IGVFDS7285VTAR",
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80                "igvf:corces_measurementSet_X014_G8_ATAC"
81            ],
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83            "lab": {
84                "title": "Ryan Corces, Gladstone Institute UCSF"
85            },
86            "preferred_assay_title": "10x multiome",
87            "status": "preview",
88            "summary": "single-nucleus ATAC-seq (10x multiome)"
89        },
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96            "file_set_type": "experimental data",
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98                "title": "Ryan Corces, Gladstone Institute UCSF"
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100            "preferred_assay_title": "10x multiome",
101            "status": "preview",
102            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
103        },
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111            "lab": {
112                "title": "Ryan Corces, Gladstone Institute UCSF"
113            },
114            "preferred_assay_title": "10x multiome",
115            "status": "preview",
116            "summary": "single-nucleus ATAC-seq (10x multiome)"
117        },
118        {
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120            "accession": "IGVFDS7801WHYT",
121            "aliases": [
122                "igvf:corces_measurementSet_X014_G1_RNA"
123            ],
124            "file_set_type": "experimental data",
125            "lab": {
126                "title": "Ryan Corces, Gladstone Institute UCSF"
127            },
128            "preferred_assay_title": "10x multiome",
129            "status": "preview",
130            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
131        },
132        {
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136                "igvf:corces_measurementSet_X014_G3_ATAC"
137            ],
138            "file_set_type": "experimental data",
139            "lab": {
140                "title": "Ryan Corces, Gladstone Institute UCSF"
141            },
142            "preferred_assay_title": "10x multiome",
143            "status": "preview",
144            "summary": "single-nucleus ATAC-seq (10x multiome)"
145        },
146        {
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152            "file_set_type": "experimental data",
153            "lab": {
154                "title": "Ryan Corces, Gladstone Institute UCSF"
155            },
156            "preferred_assay_title": "10x multiome",
157            "status": "preview",
158            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
159        },
160        {
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164                "igvf:corces_measurementSet_X014_G6_ATAC"
165            ],
166            "file_set_type": "experimental data",
167            "lab": {
168                "title": "Ryan Corces, Gladstone Institute UCSF"
169            },
170            "preferred_assay_title": "10x multiome",
171            "status": "preview",
172            "summary": "single-nucleus ATAC-seq (10x multiome)"
173        },
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178                "igvf:corces_measurementSet_X014_G6_RNA"
179            ],
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181            "lab": {
182                "title": "Ryan Corces, Gladstone Institute UCSF"
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185            "status": "preview",
186            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
187        },
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196                "title": "Ryan Corces, Gladstone Institute UCSF"
197            },
198            "preferred_assay_title": "10x multiome",
199            "status": "preview",
200            "summary": "single-nucleus ATAC-seq (10x multiome)"
201        },
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206                "igvf:corces_measurementSet_X014_G5_RNA"
207            ],
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209            "lab": {
210                "title": "Ryan Corces, Gladstone Institute UCSF"
211            },
212            "preferred_assay_title": "10x multiome",
213            "status": "preview",
214            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
215        },
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218            "accession": "IGVFDS0252BRRM",
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220                "igvf:corces_measurementSet_X014_G2_ATAC"
221            ],
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223            "lab": {
224                "title": "Ryan Corces, Gladstone Institute UCSF"
225            },
226            "preferred_assay_title": "10x multiome",
227            "status": "preview",
228            "summary": "single-nucleus ATAC-seq (10x multiome)"
229        },
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234                "igvf:corces_measurementSet_X014_G2_RNA"
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237            "lab": {
238                "title": "Ryan Corces, Gladstone Institute UCSF"
239            },
240            "preferred_assay_title": "10x multiome",
241            "status": "preview",
242            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
243        },
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249            ],
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251            "lab": {
252                "title": "Ryan Corces, Gladstone Institute UCSF"
253            },
254            "preferred_assay_title": "10x multiome",
255            "status": "preview",
256            "summary": "single-nucleus ATAC-seq (10x multiome)"
257        },
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262                "igvf:corces_measurementSet_X014_G4_RNA"
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265            "lab": {
266                "title": "Ryan Corces, Gladstone Institute UCSF"
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270            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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279            "lab": {
280                "title": "Ryan Corces, Gladstone Institute UCSF"
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282            "preferred_assay_title": "10x multiome",
283            "status": "preview",
284            "summary": "single-nucleus ATAC-seq (10x multiome)"
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293            "lab": {
294                "title": "Ryan Corces, Gladstone Institute UCSF"
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296            "preferred_assay_title": "10x multiome",
297            "status": "preview",
298            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
299        },
300        {
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302            "accession": "IGVFDS5253YWJE",
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307            "lab": {
308                "title": "Ryan Corces, Gladstone Institute UCSF"
309            },
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311            "status": "preview",
312            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
313        },
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321            "lab": {
322                "title": "Ryan Corces, Gladstone Institute UCSF"
323            },
324            "preferred_assay_title": "10x multiome",
325            "status": "preview",
326            "summary": "single-nucleus ATAC-seq (10x multiome)"
327        },
328        {
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330            "accession": "IGVFDS5213ILTX",
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333            ],
334            "file_set_type": "experimental data",
335            "lab": {
336                "title": "Ryan Corces, Gladstone Institute UCSF"
337            },
338            "preferred_assay_title": "10x multiome",
339            "status": "preview",
340            "summary": "single-nucleus ATAC-seq (10x multiome)"
341        },
342        {
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346                "igvf:corces_measurementSet_RP006_G1_RNA"
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349            "lab": {
350                "title": "Ryan Corces, Gladstone Institute UCSF"
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353            "status": "preview",
354            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
355        },
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363            "lab": {
364                "title": "Ryan Corces, Gladstone Institute UCSF"
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366            "preferred_assay_title": "10x multiome",
367            "status": "preview",
368            "summary": "single-nucleus ATAC-seq (10x multiome)"
369        },
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374                "igvf:corces_measurementSet_RP006_G6_RNA"
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377            "lab": {
378                "title": "Ryan Corces, Gladstone Institute UCSF"
379            },
380            "preferred_assay_title": "10x multiome",
381            "status": "preview",
382            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
383        },
384        {
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388                "igvf:corces_measurementSet_RP006_G8_ATAC"
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391            "lab": {
392                "title": "Ryan Corces, Gladstone Institute UCSF"
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395            "status": "preview",
396            "summary": "single-nucleus ATAC-seq (10x multiome)"
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405            "lab": {
406                "title": "Ryan Corces, Gladstone Institute UCSF"
407            },
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409            "status": "preview",
410            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
411        },
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419            "lab": {
420                "title": "Ryan Corces, Gladstone Institute UCSF"
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423            "status": "preview",
424            "summary": "single-nucleus ATAC-seq (10x multiome)"
425        },
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433            "lab": {
434                "title": "Ryan Corces, Gladstone Institute UCSF"
435            },
436            "preferred_assay_title": "10x multiome",
437            "status": "preview",
438            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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448                "title": "Ryan Corces, Gladstone Institute UCSF"
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451            "status": "preview",
452            "summary": "single-nucleus ATAC-seq (10x multiome)"
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461            "lab": {
462                "title": "Ryan Corces, Gladstone Institute UCSF"
463            },
464            "preferred_assay_title": "10x multiome",
465            "status": "preview",
466            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
467        },
468        {
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475            "lab": {
476                "title": "Ryan Corces, Gladstone Institute UCSF"
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479            "status": "preview",
480            "summary": "single-nucleus ATAC-seq (10x multiome)"
481        },
482        {
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489            "lab": {
490                "title": "Ryan Corces, Gladstone Institute UCSF"
491            },
492            "preferred_assay_title": "10x multiome",
493            "status": "preview",
494            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
495        }
496    ],
497    "institutional_certificates": [
498        {
499            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
500            "certificate_identifier": "IP115-05",
501            "controlled_access": false,
502            "status": "in progress"
503        }
504    ],
505    "lab": {
506        "@id": "/labs/ryan-corces/",
507        "title": "Ryan Corces, Gladstone Institute UCSF"
508    },
509    "lower_bound_age": 89,
510    "lower_bound_age_in_hours": 779640,
511    "multiplexed_in": [
512        {
513            "@id": "/multiplexed-samples/IGVFSM3915PNAB/",
514            "accession": "IGVFSM3915PNAB",
515            "status": "preview"
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520            "status": "preview"
521        },
522        {
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527        {
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530            "status": "preview"
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532        {
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534            "accession": "IGVFSM9366LKIJ",
535            "status": "preview"
536        },
537        {
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539            "accession": "IGVFSM7397YTSL",
540            "status": "preview"
541        },
542        {
543            "@id": "/multiplexed-samples/IGVFSM6111OIGC/",
544            "accession": "IGVFSM6111OIGC",
545            "status": "preview"
546        },
547        {
548            "@id": "/multiplexed-samples/IGVFSM3399SGBD/",
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550            "status": "preview"
551        },
552        {
553            "@id": "/multiplexed-samples/IGVFSM6003RYZR/",
554            "accession": "IGVFSM6003RYZR",
555            "status": "preview"
556        },
557        {
558            "@id": "/multiplexed-samples/IGVFSM3715NVPJ/",
559            "accession": "IGVFSM3715NVPJ",
560            "status": "preview"
561        },
562        {
563            "@id": "/multiplexed-samples/IGVFSM7010YPUF/",
564            "accession": "IGVFSM7010YPUF",
565            "status": "preview"
566        },
567        {
568            "@id": "/multiplexed-samples/IGVFSM8836YFFV/",
569            "accession": "IGVFSM8836YFFV",
570            "status": "preview"
571        },
572        {
573            "@id": "/multiplexed-samples/IGVFSM2981VRFX/",
574            "accession": "IGVFSM2981VRFX",
575            "status": "preview"
576        },
577        {
578            "@id": "/multiplexed-samples/IGVFSM7661NHYY/",
579            "accession": "IGVFSM7661NHYY",
580            "status": "preview"
581        },
582        {
583            "@id": "/multiplexed-samples/IGVFSM9866POVO/",
584            "accession": "IGVFSM9866POVO",
585            "status": "preview"
586        },
587        {
588            "@id": "/multiplexed-samples/IGVFSM5801EHME/",
589            "accession": "IGVFSM5801EHME",
590            "status": "preview"
591        }
592    ],
593    "origin_of": [],
594    "parts": [],
595    "pmi": 150,
596    "pmi_units": "minute",
597    "pooled_in": [],
598    "preservation_method": "flash-freezing",
599    "protocols": [
600        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
601    ],
602    "sample_terms": [
603        {
604            "@id": "/sample-terms/UBERON_0002129/",
605            "status": "preview",
606            "term_name": "cerebellar cortex"
607        }
608    ],
609    "schema_version": "21",
610    "sex": "male",
611    "sorted_fractions": [],
612    "sources": [
613        {
614            "@id": "/sources/banner-health/",
615            "status": "released",
616            "title": "Banner Health"
617        }
618    ],
619    "status": "preview",
620    "submitted_by": {
621        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
622        "title": "Ryan Corces"
623    },
624    "summary": "Homo sapiens (male, 89 years) cerebellar cortex tissue",
625    "taxa": "Homo sapiens",
626    "upper_bound_age": 89,
627    "upper_bound_age_in_hours": 779640,
628    "uuid": "13f4f0c7-d327-4754-aa01-79e799283b86",
629    "virtual": false
630}