middle temporal gyrus — IGVFSM0452PSYL

preview
1{
2    "@context": "/terms/",
3    "@id": "/tissues/IGVFSM0452PSYL/",
4    "@type": [
5        "Tissue",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM0452PSYL",
11    "age": "79",
12    "age_units": "year",
13    "aliases": [
14        "igvf:corces_tissue_BANN1506_MTG"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "mismatched status",
20                "detail": "Preview tissue [IGVFSM0452PSYL](/tissues/IGVFSM0452PSYL/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_item_status",
24                "path": "/tissues/IGVFSM0452PSYL/"
25            },
26            {
27                "category": "missing CCF ID",
28                "detail": "Tissue [IGVFSM0452PSYL](/tissues/IGVFSM0452PSYL/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_tissue_ccf_id",
32                "path": "/tissues/IGVFSM0452PSYL/"
33            }
34        ]
35    },
36    "award": {
37        "@id": "/awards/HG012076/",
38        "component": "mapping"
39    },
40    "classifications": [
41        "tissue"
42    ],
43    "creation_timestamp": "2025-03-19T04:12:46.266568+00:00",
44    "date_obtained": "2023-02-01",
45    "disease_terms": [
46        {
47            "@id": "/phenotype-terms/DOID_14330/",
48            "status": "in progress",
49            "term_name": "Parkinson's disease"
50        }
51    ],
52    "donors": [
53        {
54            "@id": "/human-donors/IGVFDO1278CNID/",
55            "accession": "IGVFDO1278CNID",
56            "ethnicities": [
57                "European"
58            ],
59            "status": "preview"
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61    ],
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68            ],
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72            },
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74            "status": "preview",
75            "summary": "single-nucleus ATAC-seq (10x multiome)"
76        },
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89            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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102            "status": "preview",
103            "summary": "single-nucleus ATAC-seq (10x multiome)"
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116            "status": "preview",
117            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
118        },
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124            ],
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127                "title": "Ryan Corces, Gladstone Institute UCSF"
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130            "status": "preview",
131            "summary": "single-nucleus ATAC-seq (10x multiome)"
132        },
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138            ],
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140            "lab": {
141                "title": "Ryan Corces, Gladstone Institute UCSF"
142            },
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144            "status": "preview",
145            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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152            ],
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155                "title": "Ryan Corces, Gladstone Institute UCSF"
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159            "summary": "single-nucleus ATAC-seq (10x multiome)"
160        },
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166            ],
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169                "title": "Ryan Corces, Gladstone Institute UCSF"
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172            "status": "preview",
173            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
174        },
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180            ],
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183                "title": "Ryan Corces, Gladstone Institute UCSF"
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187            "summary": "single-nucleus ATAC-seq (10x multiome)"
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211                "title": "Ryan Corces, Gladstone Institute UCSF"
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215            "summary": "single-nucleus ATAC-seq (10x multiome)"
216        },
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221                "igvf:corces_measurementSet_X033_G3_RNA"
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225                "title": "Ryan Corces, Gladstone Institute UCSF"
226            },
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229            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
230        },
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236            ],
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238            "lab": {
239                "title": "Ryan Corces, Gladstone Institute UCSF"
240            },
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243            "summary": "single-nucleus ATAC-seq (10x multiome)"
244        },
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249                "igvf:corces_measurementSet_X033_G1_RNA"
250            ],
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253                "title": "Ryan Corces, Gladstone Institute UCSF"
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257            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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267                "title": "Ryan Corces, Gladstone Institute UCSF"
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295                "title": "Ryan Corces, Gladstone Institute UCSF"
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299            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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309                "title": "Ryan Corces, Gladstone Institute UCSF"
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313            "summary": "single-nucleus ATAC-seq (10x multiome)"
314        },
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323                "title": "Ryan Corces, Gladstone Institute UCSF"
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327            "summary": "single-nucleus ATAC-seq (10x multiome)"
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337                "title": "Ryan Corces, Gladstone Institute UCSF"
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341            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
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351                "title": "Ryan Corces, Gladstone Institute UCSF"
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355            "summary": "single-nucleus ATAC-seq (10x multiome)"
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607    ],
608    "origin_of": [],
609    "parts": [],
610    "pmi": 304,
611    "pmi_units": "minute",
612    "pooled_in": [],
613    "preservation_method": "flash-freezing",
614    "protocols": [
615        "https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
616    ],
617    "sample_terms": [
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619            "@id": "/sample-terms/UBERON_0002771/",
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621            "term_name": "middle temporal gyrus"
622        }
623    ],
624    "schema_version": "21",
625    "sex": "male",
626    "sorted_fractions": [],
627    "sources": [
628        {
629            "@id": "/sources/banner-health/",
630            "status": "released",
631            "title": "Banner Health"
632        }
633    ],
634    "status": "preview",
635    "submitted_by": {
636        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
637        "title": "Ryan Corces"
638    },
639    "summary": "Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease",
640    "taxa": "Homo sapiens",
641    "upper_bound_age": 79,
642    "upper_bound_age_in_hours": 692040,
643    "uuid": "93202ac1-5f41-41ae-9f12-cc523995fa14",
644    "virtual": false
645}