{
"@context": "/terms/",
"@id": "/tissues/IGVFSM0430ARZQ/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0430ARZQ",
"age": "83",
"age_units": "year",
"aliases": [
"igvf:corces_tissue_BANN1647_CING"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview tissue [IGVFSM0430ARZQ](/tissues/IGVFSM0430ARZQ/) has in progress subobject phenotype term [DOID_14330](/phenotype-terms/DOID_14330/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tissues/IGVFSM0430ARZQ/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM0430ARZQ](/tissues/IGVFSM0430ARZQ/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM0430ARZQ/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"tissue"
],
"creation_timestamp": "2025-03-19T04:08:22.636044+00:00",
"date_obtained": "2022-10-13",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO3471KCPD/",
"accession": "IGVFDO3471KCPD",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS4496LMIG/",
"accession": "IGVFDS4496LMIG",
"aliases": [
"igvf:corces_measurementSet_X009_G7_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9660MLYS/",
"accession": "IGVFDS9660MLYS",
"aliases": [
"igvf:corces_measurementSet_X009_G7_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2827YRAB/",
"accession": "IGVFDS2827YRAB",
"aliases": [
"igvf:corces_measurementSet_X009_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1476FCGD/",
"accession": "IGVFDS1476FCGD",
"aliases": [
"igvf:corces_measurementSet_X009_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0421QOQA/",
"accession": "IGVFDS0421QOQA",
"aliases": [
"igvf:corces_measurementSet_X009_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1479ULPQ/",
"accession": "IGVFDS1479ULPQ",
"aliases": [
"igvf:corces_measurementSet_X009_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1742WBNG/",
"accession": "IGVFDS1742WBNG",
"aliases": [
"igvf:corces_measurementSet_X009_G5_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6522KVIV/",
"accession": "IGVFDS6522KVIV",
"aliases": [
"igvf:corces_measurementSet_X009_G5_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3713YVDV/",
"accession": "IGVFDS3713YVDV",
"aliases": [
"igvf:corces_measurementSet_X009_G6_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2798SZFF/",
"accession": "IGVFDS2798SZFF",
"aliases": [
"igvf:corces_measurementSet_X009_G6_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0226WYES/",
"accession": "IGVFDS0226WYES",
"aliases": [
"igvf:corces_measurementSet_X009_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4072OFXV/",
"accession": "IGVFDS4072OFXV",
"aliases": [
"igvf:corces_measurementSet_X009_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3971IMCD/",
"accession": "IGVFDS3971IMCD",
"aliases": [
"igvf:corces_measurementSet_X009_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3809XTWN/",
"accession": "IGVFDS3809XTWN",
"aliases": [
"igvf:corces_measurementSet_X009_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4476GYTZ/",
"accession": "IGVFDS4476GYTZ",
"aliases": [
"igvf:corces_measurementSet_X009_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6016VUQG/",
"accession": "IGVFDS6016VUQG",
"aliases": [
"igvf:corces_measurementSet_X009_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8397RKBP/",
"accession": "IGVFDS8397RKBP",
"aliases": [
"igvf:corces_measurementSet_RP019_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3792WNJK/",
"accession": "IGVFDS3792WNJK",
"aliases": [
"igvf:corces_measurementSet_RP019_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9257OPTG/",
"accession": "IGVFDS9257OPTG",
"aliases": [
"igvf:corces_measurementSet_RP019_G3_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2695JODN/",
"accession": "IGVFDS2695JODN",
"aliases": [
"igvf:corces_measurementSet_RP019_G3_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1252CYKZ/",
"accession": "IGVFDS1252CYKZ",
"aliases": [
"igvf:corces_measurementSet_RP019_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4002VSZF/",
"accession": "IGVFDS4002VSZF",
"aliases": [
"igvf:corces_measurementSet_RP019_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS1580SPZO/",
"accession": "IGVFDS1580SPZO",
"aliases": [
"igvf:corces_measurementSet_RP019_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS8011GZEZ/",
"accession": "IGVFDS8011GZEZ",
"aliases": [
"igvf:corces_measurementSet_RP019_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lower_bound_age": 83,
"lower_bound_age_in_hours": 727080,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM1068TNBF/",
"accession": "IGVFSM1068TNBF",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9375ZKWX/",
"accession": "IGVFSM9375ZKWX",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6928XXNG/",
"accession": "IGVFSM6928XXNG",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM9278BALJ/",
"accession": "IGVFSM9278BALJ",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0056YDLP/",
"accession": "IGVFSM0056YDLP",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM5614IWFO/",
"accession": "IGVFSM5614IWFO",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM6970GFLR/",
"accession": "IGVFSM6970GFLR",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3150FIJD/",
"accession": "IGVFSM3150FIJD",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0718CVKW/",
"accession": "IGVFSM0718CVKW",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM3886NYMH/",
"accession": "IGVFSM3886NYMH",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM4069BQTG/",
"accession": "IGVFSM4069BQTG",
"status": "preview"
},
{
"@id": "/multiplexed-samples/IGVFSM0238UJFH/",
"accession": "IGVFSM0238UJFH",
"status": "preview"
}
],
"origin_of": [],
"parts": [],
"pmi": 148,
"pmi_units": "minute",
"pooled_in": [],
"preservation_method": "flash-freezing",
"protocols": [
"https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002740/",
"status": "preview",
"term_name": "posterior cingulate gyrus"
}
],
"schema_version": "21",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease",
"taxa": "Homo sapiens",
"upper_bound_age": 83,
"upper_bound_age_in_hours": 727080,
"uuid": "4213d7ae-c2fe-43c8-9899-24d4eb285cc0",
"virtual": false
}